Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F1539_RS05660 Genome accession   NZ_CP043772
Coordinates   1075768..1076274 (-) Length   168 a.a.
NCBI ID   WP_013525504.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1070768..1081274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS05625 (F1539_05630) hpf 1071010..1071333 (-) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  F1539_RS05630 (F1539_05635) bamC 1071503..1072150 (-) 648 WP_013525506.1 outer membrane protein assembly factor BamC -
  F1539_RS05635 (F1539_05640) dapA 1072261..1073157 (-) 897 WP_013525505.1 4-hydroxy-tetrahydrodipicolinate synthase -
  F1539_RS05640 (F1539_05645) bcp 1073263..1073730 (+) 468 WP_005653400.1 thioredoxin-dependent thiol peroxidase -
  F1539_RS05645 (F1539_05650) exbB 1073899..1074351 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  F1539_RS05650 (F1539_05655) exbD 1074355..1074798 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  F1539_RS05655 (F1539_05660) - 1074808..1075590 (+) 783 WP_006996220.1 energy transducer TonB -
  F1539_RS05660 (F1539_05665) ssb 1075768..1076274 (-) 507 WP_013525504.1 single-stranded DNA-binding protein Machinery gene
  F1539_RS05665 (F1539_05670) uvrA 1076428..1079259 (+) 2832 WP_013525503.1 excinuclease ABC subunit UvrA Machinery gene
  F1539_RS10570 - 1079672..1081098 (+) 1427 Protein_1103 S6 family peptidase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18693.45 Da        Isoelectric Point: 5.2649

>NTDB_id=338698 F1539_RS05660 WP_013525504.1 1075768..1076274(-) (ssb) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGSGNDMGGAPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=338698 F1539_RS05660 WP_013525504.1 1075768..1076274(-) (ssb) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTCTGGTAATGATATGGGCGGTGCGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.495

100

0.601
  ssb Neisseria meningitidis MC58

50.867

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.867

100

0.524
  ssb Latilactobacillus sakei subsp. sakei 23K

34.831

100

0.369

Multiple sequence alignment