Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   F1539_RS05665 Genome accession   NZ_CP043772
Coordinates   1076428..1079259 (+) Length   943 a.a.
NCBI ID   WP_013525503.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1071428..1084259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS05630 (F1539_05635) bamC 1071503..1072150 (-) 648 WP_013525506.1 outer membrane protein assembly factor BamC -
  F1539_RS05635 (F1539_05640) dapA 1072261..1073157 (-) 897 WP_013525505.1 4-hydroxy-tetrahydrodipicolinate synthase -
  F1539_RS05640 (F1539_05645) bcp 1073263..1073730 (+) 468 WP_005653400.1 thioredoxin-dependent thiol peroxidase -
  F1539_RS05645 (F1539_05650) exbB 1073899..1074351 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  F1539_RS05650 (F1539_05655) exbD 1074355..1074798 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  F1539_RS05655 (F1539_05660) - 1074808..1075590 (+) 783 WP_006996220.1 energy transducer TonB -
  F1539_RS05660 (F1539_05665) ssb 1075768..1076274 (-) 507 WP_013525504.1 single-stranded DNA-binding protein Machinery gene
  F1539_RS05665 (F1539_05670) uvrA 1076428..1079259 (+) 2832 WP_013525503.1 excinuclease ABC subunit UvrA Machinery gene
  F1539_RS10570 - 1079672..1081098 (+) 1427 Protein_1103 S6 family peptidase -
  F1539_RS10575 - 1081087..1082004 (+) 918 WP_406808500.1 S6 family peptidase -
  F1539_RS10580 - 1081997..1083580 (+) 1584 WP_406808499.1 autotransporter outer membrane beta-barrel domain-containing protein -
  F1539_RS05675 (F1539_05680) - 1083719..1084165 (+) 447 WP_006996226.1 hypothetical protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104326.24 Da        Isoelectric Point: 7.1715

>NTDB_id=338699 F1539_RS05665 WP_013525503.1 1076428..1079259(+) (uvrA) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MENIDIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDSIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPDHNVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKNRKG
EHLKILENIAAQGYIRARIDGEICDLSDPPKLALQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMDNP
KAEELVFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEDRVVQNPTISLAGGAVKGWDRRNFYYYQM
LTSLAKHYDFDVEAPYESLPKKIQHIIMHGSGKEEIEFQYMNDRGDVVIRKHPFEGILNNMARRYKETESMSVREELAKN
ISNRPCIDCGGSRLRPEARNVYIGKTNLPIIAEKSIGETLEFFTALSLTGQKAQIAEKILKEIRERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAIRAADHIIDI
GPGAGVHGGQVIAQGNADEIMLNPNSITGKFLSGADKIEIPKKRTALDKKKWLKLKGASGNNLKNVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQDALNRAEKTDYAPYQSIEGLEHFDKVIDINQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVLKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFF
DAIPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLEVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKVKSSHTARFLKPILEKP

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=338699 F1539_RS05665 WP_013525503.1 1076428..1079259(+) (uvrA) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGGAAAATATCGATATTCGCGGGGCTAGAACCCATAACCTGAAAAATATTAATTTAACTATTCCACGCAATAAACTTGT
GGTGATTACTGGGCTTTCAGGTTCGGGAAAATCCTCTTTAGCCTTTGATACACTTTATGCGGAAGGGCAACGCCGCTATG
TTGAATCTCTTTCGGCGTATGCACGTCAATTTTTGTCTTTAATGGAAAAGCCTGATGTGGATTCTATTGAAGGGCTTTCC
CCTGCAATTTCCATTGAACAAAAATCTACCTCACACAATCCACGTTCTACAGTGGGAACAATTACGGAAATTTACGATTA
TTTACGTTTATTGTTTGCACGAGTAGGGGAGCCGCGTTGTCCCGATCATAATGTTCCATTAACGGCACAAACAATTAGTC
AAATGGTGGATAAAGTATTAAGTTTGCCAGAAGACAGTAAGATGATGTTACTTGCGCCAGTTGTCAAAAATCGAAAAGGC
GAACATCTCAAGATTTTAGAAAATATTGCTGCGCAAGGTTATATTCGTGCGCGTATTGATGGCGAAATTTGCGATTTATC
TGATCCGCCAAAATTAGCCTTACAGAAAAAACATACTATTGAAGTAGTGGTTGATCGCTTTAAAGTGCGGTCAGATTTAG
CAACACGTTTAGCAGAGTCTTTTGAAACCGCATTAGAGCTTTCTGGTGGCACCGCAATTGTGGCAGATATGGATAATCCG
AAAGCAGAAGAATTAGTTTTTTCGGCAAATTTTGCTTGTCCGCATTGTGGTTATTCTGTGCCAGAATTAGAGCCTCGTTT
ATTTTCCTTTAACAATCCTGCAGGTGCTTGCCCAACTTGTGATGGCTTGGGTGTGCAGCAATATTTTGATGAAGATCGTG
TGGTGCAAAATCCGACTATTTCTCTTGCTGGTGGTGCGGTAAAAGGTTGGGATCGTCGTAATTTCTATTATTATCAAATG
CTCACCTCATTGGCGAAACATTATGATTTTGATGTTGAAGCCCCTTATGAATCTTTGCCAAAGAAAATTCAACACATCAT
TATGCATGGCTCAGGCAAAGAGGAAATTGAATTCCAATATATGAATGATCGTGGCGATGTGGTTATTCGCAAGCACCCTT
TTGAAGGGATTTTGAATAATATGGCTCGCCGATATAAAGAAACGGAATCAATGTCGGTGCGTGAAGAATTAGCGAAAAAT
ATTAGCAATCGACCTTGTATAGATTGTGGTGGATCTCGTTTGAGACCCGAAGCGCGTAATGTGTATATTGGAAAAACCAA
TTTGCCGATAATTGCGGAAAAAAGCATTGGCGAAACCCTCGAATTTTTTACCGCACTTTCTCTCACTGGTCAAAAAGCGC
AAATTGCGGAAAAAATTCTTAAAGAAATCCGCGAGCGTTTGCAGTTTTTAGTCAATGTTGGTTTGAATTACCTTTCTCTT
TCTCGTTCTGCTGAAACTCTTTCAGGTGGGGAGGCACAACGTATTCGCCTTGCGAGTCAAATTGGTGCGGGACTTGTTGG
CGTAATGTATGTATTAGATGAACCTTCTATTGGCTTGCACCAACGTGATAATGAACGCTTACTTAATACGTTAATTCATT
TGCGTAATCTTGGTAATACGGTAATTGTTGTGGAACACGATGAAGACGCGATTCGTGCAGCTGACCATATTATTGATATT
GGGCCTGGTGCTGGCGTGCATGGCGGACAAGTTATTGCGCAAGGAAATGCCGATGAAATTATGCTCAATCCAAATTCCAT
CACGGGAAAATTTTTATCGGGCGCAGATAAAATCGAAATTCCTAAAAAACGCACCGCACTTGATAAGAAAAAATGGCTCA
AACTTAAAGGCGCATCAGGTAATAACTTAAAAAATGTGAATTTAGATATTCCCGTTGGTTTGTTTACTTGCGTAACTGGT
GTGTCTGGTTCAGGAAAATCCACACTTATTAATGATACTTTATTTCCACTTGCGCAAGATGCGTTAAATAGAGCGGAAAA
AACCGATTACGCACCTTATCAATCTATTGAGGGATTAGAACATTTCGATAAAGTTATTGATATTAACCAAAGCCCGATTG
GGCGTACGCCACGTTCAAATCCAGCCACTTATACAGGCTTATTTACCCCAATTCGCGAGCTTTTTGCAGGGGTGCCAGAG
GCACGTGCGCGCGGTTATAATCCTGGGCGTTTTAGCTTTAACGTACGTGGTGGACGCTGTGAAGCCTGTCAGGGCGATGG
TGTACTCAAAGTTGAAATGCACTTTTTGCCCGATGTTTATGTTCCTTGCGACCAATGTAAAGGTAAACGCTATAATCGCG
AAACCTTAGAAATTCGTTACAAAGGCAAAACGATTCATCAAGTTTTAGATATGACAGTGGAAGAAGCACGCGAGTTTTTT
GATGCGATTCCAATGATTGCAAGAAAATTACAAACCTTGATAGATGTGGGATTATCCTATATTCGATTAGGTCAATCTTC
TACAACACTTTCAGGCGGCGAAGCACAACGCGTGAAACTAGCAACGGAACTTTCTAAACGTGATACGGGTAAAACTTTGT
ATATTCTAGATGAACCGACGACTGGTTTGCATTTCGCTGACATTAAGCAATTACTTGAAGTACTGCATCGATTACGCGAC
CAAGGAAATACTATTGTCGTCATTGAACACAATCTTGATGTGATTAAAACCGCAGACTGGATTGTCGATCTTGGCCCAGA
GGGAGGCAGTGGCGGCGGACAAATTATTGCGACGGGTACACCAGAACAAGTTGCTAAAGTAAAAAGTTCCCATACCGCTC
GCTTCCTTAAACCGATTTTAGAAAAACCTTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.021

99.682

0.568
  uvrA Streptococcus pneumoniae TIGR4

57.021

99.682

0.568
  uvrA Streptococcus pneumoniae D39

57.021

99.682

0.568