Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SOR_RS09505 Genome accession   NC_015291
Coordinates   1919481..1920143 (-) Length   220 a.a.
NCBI ID   WP_000995717.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914481..1925143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS09485 (SOR_1945) rplI 1915026..1915478 (-) 453 WP_000864211.1 50S ribosomal protein L9 -
  SOR_RS09490 (SOR_1946) - 1915475..1917448 (-) 1974 WP_000739984.1 DHH family phosphoesterase -
  SOR_RS09495 (SOR_1947) - 1917594..1918772 (-) 1179 WP_000656056.1 acetyl-CoA C-acetyltransferase -
  SOR_RS09500 (SOR_1948) hpf 1918853..1919401 (-) 549 WP_000599103.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SOR_RS09505 (SOR_1949) comFC/cflB 1919481..1920143 (-) 663 WP_000995717.1 ComF family protein Machinery gene
  SOR_RS09510 (SOR_1950) comFA/cflA 1920140..1921438 (-) 1299 WP_000867707.1 DEAD/DEAH box helicase Machinery gene
  SOR_RS09515 (SOR_1951) - 1921495..1922130 (+) 636 WP_000395761.1 YigZ family protein -
  SOR_RS09520 (SOR_1952) - 1922146..1922589 (+) 444 WP_000863911.1 PH domain-containing protein -
  SOR_RS09525 (SOR_1953) cysK 1922686..1923612 (+) 927 WP_001029453.1 cysteine synthase A -
  SOR_RS09530 (SOR_1954) tsf 1923716..1924756 (-) 1041 WP_000808059.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24761.77 Da        Isoelectric Point: 8.3207

>NTDB_id=33765 SOR_RS09505 WP_000995717.1 1919481..1920143(-) (comFC/cflB) [Streptococcus oralis Uo5]
MNCLLCGQTTKGELAFSSLFLLKDDSSYLCSACVSSFEKIGENCCPNCMKIGLSTQCQDCKFWCKEGVRVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLAEELKKYRGYQFVVIPLSPGRLIERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=33765 SOR_RS09505 WP_000995717.1 1919481..1920143(-) (comFC/cflB) [Streptococcus oralis Uo5]
ATGAATTGTTTACTATGTGGCCAGACTACAAAGGGTGAGTTAGCTTTTAGTAGTCTCTTCCTTTTGAAGGATGACAGCAG
CTATCTTTGTTCAGCTTGTGTTTCTAGTTTTGAGAAGATTGGTGAGAATTGTTGCCCAAATTGTATGAAAATAGGCTTGT
CAACTCAGTGTCAAGATTGTAAATTTTGGTGTAAAGAAGGAGTTCGGGTTGATCATAAGGCGATTTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGATATAAGTTTGATGGTGATTTTTTGCTTAGAAAAGTTTTTGCTTCCGTTCTTGCTGA
GGAGCTGAAAAAGTATAGAGGTTATCAATTTGTTGTCATTCCCCTAAGTCCTGGAAGATTGATTGAGAGGGGATTTAACC
AGGTTGAAGGTTTGGTTGAGGCAGCAGGCTTTTCCTTTAAAGATATATTAGGAAAAAGAGAAGAGAGTGCTAGTTCTTCT
AAAAGCCGTTTGGAAAGGTTAGCTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCTAAGAAAATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGATGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

79.091

100

0.791
  comFC/cflB Streptococcus mitis NCTC 12261

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae TIGR4

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae Rx1

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae D39

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae R6

77.727

100

0.777
  comFC Bacillus subtilis subsp. subtilis str. 168

35.965

100

0.373

Multiple sequence alignment