Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   SOR_RS09510 Genome accession   NC_015291
Coordinates   1920140..1921438 (-) Length   432 a.a.
NCBI ID   WP_000867707.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1915140..1926438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS09490 (SOR_1946) - 1915475..1917448 (-) 1974 WP_000739984.1 DHH family phosphoesterase -
  SOR_RS09495 (SOR_1947) - 1917594..1918772 (-) 1179 WP_000656056.1 acetyl-CoA C-acetyltransferase -
  SOR_RS09500 (SOR_1948) hpf 1918853..1919401 (-) 549 WP_000599103.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SOR_RS09505 (SOR_1949) comFC/cflB 1919481..1920143 (-) 663 WP_000995717.1 ComF family protein Machinery gene
  SOR_RS09510 (SOR_1950) comFA/cflA 1920140..1921438 (-) 1299 WP_000867707.1 DEAD/DEAH box helicase Machinery gene
  SOR_RS09515 (SOR_1951) - 1921495..1922130 (+) 636 WP_000395761.1 YigZ family protein -
  SOR_RS09520 (SOR_1952) - 1922146..1922589 (+) 444 WP_000863911.1 PH domain-containing protein -
  SOR_RS09525 (SOR_1953) cysK 1922686..1923612 (+) 927 WP_001029453.1 cysteine synthase A -
  SOR_RS09530 (SOR_1954) tsf 1923716..1924756 (-) 1041 WP_000808059.1 translation elongation factor Ts -
  SOR_RS09535 (SOR_1955) rpsB 1924835..1925614 (-) 780 WP_000268475.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 49673.54 Da        Isoelectric Point: 8.2057

>NTDB_id=33766 SOR_RS09510 WP_000867707.1 1920140..1921438(-) (comFA/cflA) [Streptococcus oralis Uo5]
MKVNPNYLGRLFTEKELTEEERQMAEKLPAMRKEKGKLFCQRCNSLILEEWYLPISAYYCRKCLLMKRVRSDQALYYFPQ
EDFPKQDVLKWCGQLTPFQEKVSEGLIRAVEKKEPTLVHAVTGAGKTEMIYQVVAKVIDDGGAVCLVSPRIDVCLELYKR
LQNDFACDIALLHGESEPYFRTPLVVATTHQLLKFYHAFDLLIVDEVDAFPYVDNSMLYYAVKNSVKEDGLRIFLTATST
DELDRKVRTGELKRLSLPRRFHGNPLIIPKPVWLSDFNRHLENNQLSSKLKTYIEKQRRSGYPLLVFASEIKKGEKLKEI
LQDQYPNENIGFVSSVTEDRLEQVQAFRDGELTILISTTILERGVTFPCVDVFVVEANHRLFTKSSLIQIGGRVGRSMDR
PTGELLFFHDGLNASIKKAIKEIKQMNKEAGL

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=33766 SOR_RS09510 WP_000867707.1 1920140..1921438(-) (comFA/cflA) [Streptococcus oralis Uo5]
ATGAAAGTAAATCCAAATTATCTCGGTCGCTTGTTTACTGAGAAAGAATTAACTGAAGAAGAACGTCAGATGGCTGAAAA
ACTTCCAGCAATGAGAAAAGAGAAAGGGAAACTGTTTTGTCAACGTTGTAATAGTTTGATTCTAGAAGAATGGTATTTGC
CTATTAGCGCCTACTATTGCAGGAAGTGTTTGCTGATGAAGCGAGTCAGGAGTGATCAAGCTTTATACTATTTTCCGCAG
GAAGATTTTCCTAAGCAAGATGTTCTCAAATGGTGTGGTCAGTTAACCCCTTTTCAGGAGAAGGTATCAGAGGGGTTGAT
TCGAGCAGTCGAAAAGAAAGAACCGACTTTAGTTCATGCTGTGACAGGAGCTGGAAAGACAGAGATGATTTATCAAGTTG
TTGCGAAAGTGATTGATGATGGTGGTGCAGTTTGTTTGGTAAGTCCTCGAATTGATGTGTGTTTGGAACTGTATAAGCGA
CTGCAGAATGACTTTGCTTGCGATATAGCGCTACTCCATGGCGAATCAGAGCCCTATTTTCGAACTCCCTTAGTAGTTGC
AACAACTCATCAGTTATTAAAATTTTATCATGCTTTTGATTTGTTGATAGTGGATGAGGTAGATGCCTTTCCTTATGTTG
ACAACTCTATGCTTTACTATGCTGTAAAGAACAGTGTAAAGGAGGATGGATTAAGGATATTTCTTACAGCAACTTCTACA
GATGAGTTAGATAGGAAGGTTCGCACAGGAGAATTAAAACGATTAAGCTTGCCGAGACGGTTTCATGGAAATCCTTTGAT
TATTCCTAAACCTGTCTGGTTATCAGATTTCAATCGTCATTTAGAAAATAATCAATTGTCATCAAAATTAAAGACCTATA
TTGAGAAACAGAGAAGATCAGGTTATCCATTGCTTGTTTTTGCATCAGAGATTAAGAAAGGCGAAAAACTAAAAGAAATC
TTGCAAGATCAGTACCCGAATGAGAATATCGGCTTTGTGTCTTCTGTGACAGAAGACCGATTAGAGCAGGTGCAAGCTTT
TCGAGATGGAGAACTAACAATACTGATCAGTACGACAATATTGGAACGTGGGGTTACCTTCCCTTGTGTGGATGTTTTCG
TAGTAGAAGCTAATCATCGACTCTTTACCAAGTCTAGTTTGATTCAGATTGGTGGTCGAGTCGGGCGTAGTATGGACAGA
CCAACTGGTGAGTTGCTCTTTTTTCATGATGGACTAAATGCTTCCATCAAGAAAGCAATCAAGGAAATCAAGCAGATGAA
CAAGGAGGCGGGATTATGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(99-242)

Helicase conserved C-terminal domain (Helicase_C)

(291-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

89.352

100

0.894
  comFA/cflA Streptococcus mitis SK321

89.12

100

0.891
  comFA/cflA Streptococcus pneumoniae Rx1

89.12

100

0.891
  comFA/cflA Streptococcus pneumoniae D39

89.12

100

0.891
  comFA/cflA Streptococcus pneumoniae R6

89.12

100

0.891
  comFA/cflA Streptococcus pneumoniae TIGR4

88.889

100

0.889
  comFA Lactococcus lactis subsp. cremoris KW2

50.245

94.444

0.475
  comFA Latilactobacillus sakei subsp. sakei 23K

38.128

100

0.387

Multiple sequence alignment