Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   EQH32_RS09680 Genome accession   NZ_CP035248
Coordinates   1869472..1870488 (-) Length   338 a.a.
NCBI ID   WP_001844019.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901939     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1864472..1875488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH32_RS09645 (EQH32_10155) - 1865585..1866386 (+) 802 WP_128887635.1 IS5 family transposase -
  EQH32_RS09650 (EQH32_10160) - 1866538..1867014 (+) 477 WP_000777686.1 GNAT family N-acetyltransferase -
  EQH32_RS09655 (EQH32_10165) comGG/cglG 1867688..1868080 (-) 393 WP_001818966.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH32_RS09660 (EQH32_10170) comGF/cglF 1868058..1868519 (-) 462 WP_000250538.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH32_RS09665 (EQH32_10175) comGE/cglE 1868482..1868784 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH32_RS09670 (EQH32_10180) comGD/cglD 1868747..1869151 (-) 405 WP_000588017.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH32_RS09675 (EQH32_10185) comGC/cglC 1869144..1869470 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  EQH32_RS09680 (EQH32_10190) comGB/cglB 1869472..1870488 (-) 1017 WP_001844019.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH32_RS09685 (EQH32_10195) comGA/cglA/cilD 1870436..1871377 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH32_RS09690 (EQH32_10200) - 1871453..1871818 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQH32_RS09695 (EQH32_10205) - 1871970..1873028 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -
  EQH32_RS09700 (EQH32_10210) nagA 1873191..1874342 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38540.51 Da        Isoelectric Point: 9.4800

>NTDB_id=337628 EQH32_RS09680 WP_001844019.1 1869472..1870488(-) (comGB/cglB) [Streptococcus pneumoniae strain TVO_1901939]
MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSSLLDKQCVTQMRTGLSQGKSFSEMMESLGCSSTI
VTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPLILLDFLLLIMLGLRNYLLPQLDSSNIATRIIGNLPQIF
LGMVGLVSVLALLALTFYKRSSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEI
GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=337628 EQH32_RS09680 WP_001844019.1 1869472..1870488(-) (comGB/cglB) [Streptococcus pneumoniae strain TVO_1901939]
ATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAAGCAAAAAAATATCATCACCCTATTTAA
CAATCTCTTTTCTAGCGGTTTTCATCTGGTGGAGACTATCTCCTTTTTAGATAGGAGTTCCTTGTTGGACAAGCAGTGTG
TGACCCAGATGCGTACAGGCTTGTCTCAGGGGAAATCATTCTCAGAAATGATGGAAAGTTTGGGATGTTCAAGTACCATT
GTCACTCAGTTATCTCTAGCTGAAGTTCATGGCAATCTTCACCTGAGTTTGGGAAAGATAGAAGAATATCTAGACAATCT
GGCCAAGGTCAAGAAAAAGTTAATTGAAGTAGCGACCTATCCTTTGATTTTGCTGGATTTTCTTCTCTTAATTATGCTGG
GGCTACGGAATTACCTGCTCCCACAACTGGATAGTAGCAATATTGCCACCCGAATTATCGGTAATCTGCCACAAATTTTT
CTAGGCATGGTAGGGCTTGTTTCCGTGCTTGCCCTTTTAGCACTAACTTTTTATAAAAGAAGTTCTAAGATGAGTGTCTT
TTCTATCTTAGCACGCCTTCCCTTTATTGGAATCTTTGTGCAGACCTACTTGACAGCCTATTATGCACGTGAATGGGGGA
ATATGATTTCACAGGGAATGGAGCTGACGCAGATTTTTCAAATGATGCAGGAACAAGGTTCCCAGCTCTTTAAAGAAATC
GGTCAAGATCTGGCTCAAACCCTGAAAAATGGCCGTGAATTTTCTCAGACGATAGGAACCTATCCTTTCTTTAGGAAGGA
ATTGAGTCTCATCATAGAGTATGGGGAAGTTAAGTCCAAGCTGGGTAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAATTTGGTGCAGCCACTGGTTTTTATCTTTGTGGCACTGATTATCGTT
TTACTTTATGCGGCAATGCTCATGCCCATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus pneumoniae Rx1

98.225

100

0.982
  comGB/cglB Streptococcus pneumoniae D39

98.225

100

0.982
  comGB/cglB Streptococcus pneumoniae R6

98.225

100

0.982
  comGB/cglB Streptococcus pneumoniae TIGR4

98.225

100

0.982
  comGB/cglB Streptococcus mitis SK321

94.675

100

0.947
  comGB/cglB Streptococcus mitis NCTC 12261

93.787

100

0.938
  comYB Streptococcus gordonii str. Challis substr. CH1

70.238

99.408

0.698
  comYB Streptococcus mutans UA140

58.176

94.083

0.547
  comYB Streptococcus mutans UA159

58.176

94.083

0.547
  comGB Lactococcus lactis subsp. cremoris KW2

50.898

98.817

0.503

Multiple sequence alignment