Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   EQH33_RS09325 Genome accession   NZ_CP035247
Coordinates   1837420..1837833 (-) Length   137 a.a.
NCBI ID   WP_000265624.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901940     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1832420..1842833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH33_RS09300 (EQH33_09850) - 1833115..1833939 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH33_RS09305 (EQH33_09855) rnpA 1833914..1834285 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH33_RS10455 - 1834302..1834433 (-) 132 WP_000768904.1 hypothetical protein -
  EQH33_RS09310 (EQH33_09860) - 1834434..1835624 (-) 1191 WP_000167766.1 acetate kinase -
  EQH33_RS09315 (EQH33_09865) comYH 1835675..1836628 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  EQH33_RS09320 (EQH33_09870) - 1836689..1837283 (-) 595 Protein_1828 class I SAM-dependent methyltransferase -
  EQH33_RS09325 (EQH33_09875) comGG/cglG 1837420..1837833 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH33_RS09330 (EQH33_09880) comGF/cglF 1837811..1838272 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH33_RS09335 (EQH33_09885) comGE/cglE 1838235..1838537 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH33_RS09340 (EQH33_09890) comGD/cglD 1838500..1838904 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH33_RS09345 (EQH33_09895) comGC/cglC 1838897..1839223 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  EQH33_RS09350 (EQH33_09900) comGB/cglB 1839225..1840241 (-) 1017 WP_076750272.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH33_RS09355 (EQH33_09905) comGA/cglA/cilD 1840189..1841130 (-) 942 WP_000249556.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH33_RS09360 (EQH33_09910) - 1841206..1841571 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQH33_RS09365 (EQH33_09915) - 1841722..1842780 (-) 1059 WP_000649466.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15955.42 Da        Isoelectric Point: 10.2472

>NTDB_id=337545 EQH33_RS09325 WP_000265624.1 1837420..1837833(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901940]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=337545 EQH33_RS09325 WP_000265624.1 1837420..1837833(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901940]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment