Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BSR23_RS05860 Genome accession   NZ_CP043421
Coordinates   1146117..1146716 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain MVP1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141117..1151716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS05840 (BSR23_005840) - 1142416..1142820 (+) 405 WP_025611863.1 YbaN family protein -
  BSR23_RS05845 (BSR23_005845) apt 1142986..1143531 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  BSR23_RS05850 (BSR23_005850) dnaX 1143540..1145675 (+) 2136 WP_029796900.1 DNA polymerase III subunit gamma/tau -
  BSR23_RS05855 (BSR23_005855) - 1145758..1146087 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  BSR23_RS05860 (BSR23_005860) recR 1146117..1146716 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  BSR23_RS05865 (BSR23_005865) aqpZ 1146767..1147465 (-) 699 WP_077672614.1 aquaporin Z -
  BSR23_RS05870 (BSR23_005870) - 1147672..1148931 (-) 1260 WP_005494432.1 amino acid permease -
  BSR23_RS05875 (BSR23_005875) - 1149253..1149633 (+) 381 WP_005479566.1 RidA family protein -
  BSR23_RS05880 (BSR23_005880) - 1149649..1150926 (+) 1278 WP_077672711.1 serine dehydratase subunit alpha family protein -
  BSR23_RS05885 (BSR23_005885) - 1150955..1151614 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=337339 BSR23_RS05860 WP_005460088.1 1146117..1146716(+) (recR) [Vibrio parahaemolyticus strain MVP1]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=337339 BSR23_RS05860 WP_005460088.1 1146117..1146716(+) (recR) [Vibrio parahaemolyticus strain MVP1]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment