Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   BSR23_RS04365 Genome accession   NZ_CP043421
Coordinates   843451..844134 (-) Length   227 a.a.
NCBI ID   WP_077671779.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MVP1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 838451..849134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS04335 (BSR23_004335) - 839088..840008 (+) 921 WP_010446562.1 IS5-like element ISVa2 family transposase -
  BSR23_RS27510 (BSR23_004340) - 840364..840489 (+) 126 WP_001303004.1 LysR family transcriptional regulator -
  BSR23_RS04345 (BSR23_004345) - 840499..841707 (-) 1209 Protein_707 IS4-like element ISVsa5 family transposase -
  BSR23_RS04355 (BSR23_004355) - 841911..842294 (+) 384 WP_077671777.1 TIR domain-containing protein -
  BSR23_RS04360 (BSR23_004360) - 842305..843279 (+) 975 WP_077671778.1 caspase family protein -
  BSR23_RS04365 (BSR23_004365) ideA 843451..844134 (-) 684 WP_077671779.1 endonuclease Regulator
  BSR23_RS04370 (BSR23_004370) - 844243..844845 (-) 603 WP_032081055.1 hypothetical protein -
  BSR23_RS04375 (BSR23_004375) - 845213..845539 (+) 327 WP_077671780.1 plasmid-related protein -
  BSR23_RS04380 (BSR23_004380) - 845555..845974 (+) 420 WP_040132793.1 single-stranded DNA-binding protein -
  BSR23_RS04385 (BSR23_004385) bet 846054..846872 (+) 819 WP_000414662.1 phage recombination protein Bet -
  BSR23_RS26765 - 846954..847097 (+) 144 WP_169674712.1 hypothetical protein -
  BSR23_RS04390 (BSR23_004390) - 847159..848175 (+) 1017 WP_077671781.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26505.62 Da        Isoelectric Point: 7.1838

>NTDB_id=337335 BSR23_RS04365 WP_077671779.1 843451..844134(-) (ideA) [Vibrio parahaemolyticus strain MVP1]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKSILGKSNCYVSDSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=337335 BSR23_RS04365 WP_077671779.1 843451..844134(-) (ideA) [Vibrio parahaemolyticus strain MVP1]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAA
GTATTCTAGGTAAATCAAATTGCTATGTATCAGATAGCTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

95.154

100

0.952
  dns Aliivibrio fischeri ES114

50.87

100

0.515
  dns Vibrio parahaemolyticus RIMD 2210633

51.092

100

0.515
  dns Vibrio cholerae strain A1552

50.667

99.119

0.502
  dns Campylobacter jejuni RM1221

37.778

99.119

0.374

Multiple sequence alignment