Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   EQH37_RS09735 Genome accession   NZ_CP035243
Coordinates   1928013..1928423 (-) Length   136 a.a.
NCBI ID   WP_000265621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901946     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1923013..1933423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH37_RS09710 (EQH37_10250) - 1923715..1924539 (-) 825 WP_201454401.1 membrane protein insertase YidC -
  EQH37_RS09715 (EQH37_10255) rnpA 1924514..1924885 (-) 372 WP_000739244.1 ribonuclease P protein component -
  EQH37_RS10880 - 1924902..1925033 (-) 132 WP_000768904.1 hypothetical protein -
  EQH37_RS09720 (EQH37_10260) - 1925034..1926224 (-) 1191 WP_000167756.1 acetate kinase -
  EQH37_RS09725 (EQH37_10265) comYH 1926275..1927228 (-) 954 WP_061367493.1 class I SAM-dependent methyltransferase Machinery gene
  EQH37_RS09730 - 1927289..1927876 (-) 588 Protein_1917 class I SAM-dependent methyltransferase -
  EQH37_RS09735 (EQH37_10280) comGG/cglG 1928013..1928423 (-) 411 WP_000265621.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH37_RS09740 (EQH37_10285) comGF/cglF 1928401..1928862 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH37_RS09745 (EQH37_10290) comGE/cglE 1928825..1929127 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH37_RS09750 (EQH37_10295) comGD/cglD 1929090..1929494 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH37_RS09755 (EQH37_10300) comGC/cglC 1929487..1929813 (-) 327 WP_000738629.1 comG operon protein ComGC Machinery gene
  EQH37_RS09760 (EQH37_10305) comGB/cglB 1929815..1930831 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH37_RS09765 (EQH37_10310) comGA/cglA/cilD 1930779..1931720 (-) 942 WP_000249548.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH37_RS09770 (EQH37_10315) - 1931796..1932161 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQH37_RS09775 (EQH37_10320) - 1932312..1933370 (-) 1059 WP_050145166.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 136 a.a.        Molecular weight: 15718.07 Da        Isoelectric Point: 10.1853

>NTDB_id=337237 EQH37_RS09735 WP_000265621.1 1928013..1928423(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901946]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKSEEKPEKKENS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=337237 EQH37_RS09735 WP_000265621.1 1928013..1928423(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901946]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCAATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACTGATTCAAGCGAAAAAGCGGAGAAAAAATCAGAAGAGAAGCCTGAAAAGAAAG
AGAATTCATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae TIGR4

95.726

86.029

0.824

  comGG/cglG Streptococcus pneumoniae Rx1

95.726

86.029

0.824

  comGG/cglG Streptococcus pneumoniae D39

95.726

86.029

0.824

  comGG/cglG Streptococcus pneumoniae R6

95.726

86.029

0.824

  comGG/cglG Streptococcus mitis NCTC 12261

90.164

89.706

0.809

  comGG/cglG Streptococcus mitis SK321

86.885

89.706

0.779

  comYG Streptococcus mutans UA140

39.552

98.529

0.39

  comYG Streptococcus mutans UA159

39.552

98.529

0.39


Multiple sequence alignment