Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQH37_RS09725 Genome accession   NZ_CP035243
Coordinates   1926275..1927228 (-) Length   317 a.a.
NCBI ID   WP_061367493.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901946     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1921275..1932228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH37_RS09700 (EQH37_10240) - 1922036..1922659 (-) 624 WP_000932660.1 hypothetical protein -
  EQH37_RS09705 (EQH37_10245) jag 1922710..1923696 (-) 987 WP_044727692.1 RNA-binding cell elongation regulator Jag/EloR -
  EQH37_RS09710 (EQH37_10250) - 1923715..1924539 (-) 825 WP_201454401.1 membrane protein insertase YidC -
  EQH37_RS09715 (EQH37_10255) rnpA 1924514..1924885 (-) 372 WP_000739244.1 ribonuclease P protein component -
  EQH37_RS10880 - 1924902..1925033 (-) 132 WP_000768904.1 hypothetical protein -
  EQH37_RS09720 (EQH37_10260) - 1925034..1926224 (-) 1191 WP_000167756.1 acetate kinase -
  EQH37_RS09725 (EQH37_10265) comYH 1926275..1927228 (-) 954 WP_061367493.1 class I SAM-dependent methyltransferase Machinery gene
  EQH37_RS09730 - 1927289..1927876 (-) 588 Protein_1917 class I SAM-dependent methyltransferase -
  EQH37_RS09735 (EQH37_10280) comGG/cglG 1928013..1928423 (-) 411 WP_000265621.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH37_RS09740 (EQH37_10285) comGF/cglF 1928401..1928862 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH37_RS09745 (EQH37_10290) comGE/cglE 1928825..1929127 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH37_RS09750 (EQH37_10295) comGD/cglD 1929090..1929494 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH37_RS09755 (EQH37_10300) comGC/cglC 1929487..1929813 (-) 327 WP_000738629.1 comG operon protein ComGC Machinery gene
  EQH37_RS09760 (EQH37_10305) comGB/cglB 1929815..1930831 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH37_RS09765 (EQH37_10310) comGA/cglA/cilD 1930779..1931720 (-) 942 WP_000249548.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH37_RS09770 (EQH37_10315) - 1931796..1932161 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35724.99 Da        Isoelectric Point: 4.2706

>NTDB_id=337236 EQH37_RS09725 WP_061367493.1 1926275..1927228(-) (comYH) [Streptococcus pneumoniae strain TVO_1901946]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGAIFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=337236 EQH37_RS09725 WP_061367493.1 1926275..1927228(-) (comYH) [Streptococcus pneumoniae strain TVO_1901946]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTATTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment