Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBR47_RS29550 Genome accession   NC_012491
Coordinates   6272410..6272889 (-) Length   159 a.a.
NCBI ID   WP_015894082.1    Uniprot ID   C0ZA46
Organism   Brevibacillus brevis NBRC 100599     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6267410..6277889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR47_RS29530 (BBR47_59190) rplI 6268726..6269169 (-) 444 WP_015894079.1 50S ribosomal protein L9 -
  BBR47_RS29535 (BBR47_59200) - 6269196..6271133 (-) 1938 WP_015894080.1 DHH family phosphoesterase -
  BBR47_RS29540 (BBR47_59210) - 6271138..6272046 (-) 909 WP_015894081.1 DUF2232 domain-containing protein -
  BBR47_RS29545 (BBR47_59220) rpsR 6272139..6272369 (-) 231 WP_007720187.1 30S ribosomal protein S18 -
  BBR47_RS29550 (BBR47_59230) ssbA 6272410..6272889 (-) 480 WP_015894082.1 single-stranded DNA-binding protein Machinery gene
  BBR47_RS29555 (BBR47_59240) rpsF 6272919..6273206 (-) 288 WP_007720183.1 30S ribosomal protein S6 -
  BBR47_RS29560 (BBR47_59250) ychF 6273350..6274450 (-) 1101 WP_015894083.1 redox-regulated ATPase YchF -
  BBR47_RS29565 (BBR47_59260) - 6274666..6275289 (+) 624 WP_015894084.1 NAD(P)-dependent oxidoreductase -
  BBR47_RS29570 (BBR47_59270) pepF 6275354..6277264 (-) 1911 WP_041749747.1 oligoendopeptidase F -
  BBR47_RS30745 - 6277621..6277707 (+) 87 WP_016739383.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17240.15 Da        Isoelectric Point: 5.2753

>NTDB_id=33713 BBR47_RS29550 WP_015894082.1 6272410..6272889(-) (ssbA) [Brevibacillus brevis NBRC 100599]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAVNRPRTNQAGERETDFINIVAWQKLADLCASYLRKGRQAAIEGRMQTRS
YDNKEGKKVYVTEVVAENVQFLGGRGNESGGDNPGYDPGPGMGGGNKPSGQRNNDYDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=33713 BBR47_RS29550 WP_015894082.1 6272410..6272889(-) (ssbA) [Brevibacillus brevis NBRC 100599]
ATGAATAAAGTCATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCCAC
TTTTACTGTGGCCGTTAATCGTCCCCGCACCAATCAAGCGGGAGAGAGAGAAACGGACTTCATTAACATTGTCGCTTGGC
AAAAACTTGCCGACCTGTGCGCAAGCTATTTGCGTAAAGGTAGACAAGCAGCCATCGAAGGACGTATGCAAACACGCTCC
TATGATAATAAAGAAGGTAAAAAGGTATACGTGACGGAAGTCGTTGCGGAGAACGTTCAATTTTTGGGCGGTCGAGGTAA
TGAATCCGGCGGAGACAATCCAGGATACGATCCAGGACCAGGCATGGGTGGCGGTAACAAACCATCCGGTCAACGAAATA
ATGACTACGATCCGTTTGGTGATCCTTTCGCGAGTGCAGGCAAGCCGATCAACATTTCAGATGATGACTTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0ZA46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.579
  ssb Latilactobacillus sakei subsp. sakei 23K

43.787

100

0.465
  ssb Vibrio cholerae strain A1552

36.757

100

0.428
  ssb Neisseria gonorrhoeae MS11

37.143

100

0.409
  ssb Neisseria meningitidis MC58

36.571

100

0.403
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.377

Multiple sequence alignment