Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SOR_RS04565 Genome accession   NC_015291
Coordinates   907851..908531 (+) Length   226 a.a.
NCBI ID   WP_000286944.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902851..913531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS04555 (SOR_0932) - 903664..905334 (+) 1671 WP_000845256.1 formate--tetrahydrofolate ligase -
  SOR_RS04560 (SOR_0933) pcrA 905517..907808 (+) 2292 WP_000992898.1 DNA helicase PcrA -
  SOR_RS04565 (SOR_0934) radC 907851..908531 (+) 681 WP_000286944.1 RadC family protein Machinery gene
  SOR_RS04570 (SOR_0935) - 908546..909034 (-) 489 WP_001002679.1 hypothetical protein -
  SOR_RS04575 (SOR_0936) - 909059..909748 (-) 690 WP_000743313.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SOR_RS04580 (SOR_0937) - 909764..910405 (-) 642 WP_000653412.1 redox-sensing transcriptional repressor Rex -
  SOR_RS04585 (SOR_0938) - 910488..910703 (-) 216 WP_000286091.1 DUF4649 family protein -
  SOR_RS04590 (SOR_0939) - 910710..911057 (-) 348 WP_000863522.1 DUF1831 domain-containing protein -
  SOR_RS04595 (SOR_0940) - 911062..912177 (-) 1116 WP_000639673.1 cysteine desulfurase family protein -
  SOR_RS04600 (SOR_0941) - 912187..913146 (-) 960 WP_001283843.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25623.50 Da        Isoelectric Point: 6.9371

>NTDB_id=33713 SOR_RS04565 WP_000286944.1 907851..908531(+) (radC) [Streptococcus oralis Uo5]
MYSISFQEDSLLPRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQRVLNSLNSLTDLKNMTLQELQSLSGIGRIKA
IELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSATRSIAEPREILH
YALKHMATSVILVHNHPSGAVSPSRNDDHVTKLVKEACELMGIVFLDHLIVSHSDYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=33713 SOR_RS04565 WP_000286944.1 907851..908531(+) (radC) [Streptococcus oralis Uo5]
ATGTACAGTATTTCATTCCAAGAAGATTCGCTCTTGCCTAGAGAAAGACTAGTTAAAGAAGGAGTAGAGGCTCTAAGCAA
TCAAGAGTTGTTAGCTATTTTGCTCAGAACAGGAACGCGTCAGGCTAATGTCTTTGAAATTGCCCAGAGAGTCTTGAATA
GTCTTAACAGTCTAACTGATCTGAAAAATATGACCCTGCAGGAATTGCAGAGTCTGTCTGGTATTGGACGGATTAAGGCC
ATTGAACTACAAGCAGTGATTGAACTGGGGCATCGTATTCATAAACATGAAACCCTTGAGATGGAAAGTATTCTCAGTAG
TCAAAAGCTAGCCAAGAAAATGCAACAGGAACTTGGCGACAAAAAACAAGAGCACCTAGTGGCGCTCTATCTCAATACTC
AAAATCAAATCATTCATCAACAGACCATCTTTATCGGATCCGCGACACGCAGCATTGCTGAACCGAGGGAAATCCTTCAC
TATGCTTTGAAGCATATGGCTACCTCAGTGATACTCGTTCACAATCATCCATCAGGTGCTGTATCTCCTAGTCGAAACGA
CGACCATGTCACTAAACTAGTCAAGGAAGCCTGCGAATTGATGGGAATTGTTTTCTTGGACCATTTGATTGTCTCTCACT
CTGATTACTTTAGTTACCGCGAAAAGACGGATTTGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

93.363

100

0.934
  radC Streptococcus pneumoniae R6

92.92

100

0.929
  radC Streptococcus pneumoniae D39

92.92

100

0.929
  radC Streptococcus gordonii str. Challis substr. CH1

75.221

100

0.752
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment