Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | FY406_RS04155 | Genome accession | NZ_CP043405 |
| Coordinates | 851688..852095 (+) | Length | 135 a.a. |
| NCBI ID | WP_003086838.1 | Uniprot ID | A0ABN0GXU9 |
| Organism | Streptococcus ratti strain ATCC 31377 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 846688..857095
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY406_RS04130 (FY406_04130) | - | 847422..848114 (+) | 693 | WP_003086843.1 | response regulator transcription factor | - |
| FY406_RS04135 (FY406_04135) | - | 848077..849426 (+) | 1350 | WP_003086842.1 | cell wall metabolism sensor histidine kinase WalK | - |
| FY406_RS04140 (FY406_04140) | comGA | 849479..850420 (+) | 942 | WP_003086841.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FY406_RS04145 (FY406_04145) | comGB | 850344..851387 (+) | 1044 | WP_404827213.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FY406_RS04150 (FY406_04150) | comGC | 851387..851701 (+) | 315 | WP_003086839.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FY406_RS04155 (FY406_04155) | comGD | 851688..852095 (+) | 408 | WP_003086838.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FY406_RS04160 (FY406_04160) | comGE | 852067..852360 (+) | 294 | WP_003086837.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| FY406_RS04165 (FY406_04165) | comGF | 852347..852781 (+) | 435 | WP_003086836.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FY406_RS04170 (FY406_04170) | comGG | 852759..853166 (+) | 408 | WP_003091335.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| FY406_RS04175 (FY406_04175) | comGH | 853215..854168 (+) | 954 | WP_003086833.1 | class I SAM-dependent methyltransferase | Machinery gene |
| FY406_RS04180 (FY406_04180) | - | 854228..855427 (+) | 1200 | WP_003086832.1 | acetate kinase | - |
| FY406_RS04185 (FY406_04185) | - | 855630..856307 (+) | 678 | WP_003086831.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 15199.55 Da Isoelectric Point: 8.4323
>NTDB_id=336834 FY406_RS04155 WP_003086838.1 851688..852095(+) (comGD) [Streptococcus ratti strain ATCC 31377]
MWRIKVKAFTLLESLITLAITAFLILSLSGGIEQTFASVEEQLFFLSFEHLYRDTQKFSALSKQEMTLTLDKGKISNGLE
TLDVPEHIKLGKDMTLHFDQAGGNSSLAKLSFQTPKKTVTYQLYIGSGQYKKTEN
MWRIKVKAFTLLESLITLAITAFLILSLSGGIEQTFASVEEQLFFLSFEHLYRDTQKFSALSKQEMTLTLDKGKISNGLE
TLDVPEHIKLGKDMTLHFDQAGGNSSLAKLSFQTPKKTVTYQLYIGSGQYKKTEN
Nucleotide
Download Length: 408 bp
>NTDB_id=336834 FY406_RS04155 WP_003086838.1 851688..852095(+) (comGD) [Streptococcus ratti strain ATCC 31377]
ATGTGGCGAATTAAAGTTAAAGCTTTTACTCTTTTGGAGAGCCTAATAACTCTAGCCATTACAGCTTTTTTAATTCTGAG
TCTGTCTGGGGGAATTGAGCAGACCTTTGCCAGTGTAGAAGAGCAGCTCTTTTTTCTGTCATTTGAGCATCTTTATCGTG
ACACACAGAAGTTCAGTGCTCTATCTAAACAGGAAATGACTCTGACTTTAGATAAAGGAAAAATTTCTAATGGCCTTGAG
ACGCTTGATGTTCCTGAGCATATTAAATTAGGAAAAGACATGACGCTGCATTTTGATCAAGCAGGCGGGAACTCGTCGCT
AGCTAAACTTAGTTTCCAGACTCCAAAAAAGACAGTAACTTATCAATTATACATAGGGAGTGGTCAATATAAAAAGACAG
AAAATTAA
ATGTGGCGAATTAAAGTTAAAGCTTTTACTCTTTTGGAGAGCCTAATAACTCTAGCCATTACAGCTTTTTTAATTCTGAG
TCTGTCTGGGGGAATTGAGCAGACCTTTGCCAGTGTAGAAGAGCAGCTCTTTTTTCTGTCATTTGAGCATCTTTATCGTG
ACACACAGAAGTTCAGTGCTCTATCTAAACAGGAAATGACTCTGACTTTAGATAAAGGAAAAATTTCTAATGGCCTTGAG
ACGCTTGATGTTCCTGAGCATATTAAATTAGGAAAAGACATGACGCTGCATTTTGATCAAGCAGGCGGGAACTCGTCGCT
AGCTAAACTTAGTTTCCAGACTCCAAAAAAGACAGTAACTTATCAATTATACATAGGGAGTGGTCAATATAAAAAGACAG
AAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Streptococcus mutans UA159 |
70.455 |
97.778 |
0.689 |
| comGD | Streptococcus mutans UA140 |
70.455 |
97.778 |
0.689 |
| comGD/cglD | Streptococcus mitis SK321 |
52.756 |
94.074 |
0.496 |
| comGD/cglD | Streptococcus mitis NCTC 12261 |
51.938 |
95.556 |
0.496 |
| comGD/cglD | Streptococcus pneumoniae D39 |
51.969 |
94.074 |
0.489 |
| comGD/cglD | Streptococcus pneumoniae Rx1 |
51.969 |
94.074 |
0.489 |
| comGD/cglD | Streptococcus pneumoniae R6 |
51.969 |
94.074 |
0.489 |
| comGD/cglD | Streptococcus pneumoniae TIGR4 |
51.181 |
94.074 |
0.481 |
| comGD | Streptococcus gordonii str. Challis substr. CH1 |
45.185 |
100 |
0.452 |
| comGD | Lactococcus lactis subsp. cremoris KW2 |
38.194 |
100 |
0.407 |