Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AGROH133_RS00450 Genome accession   NC_015183
Coordinates   97626..98231 (-) Length   201 a.a.
NCBI ID   WP_013635227.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92626..103231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGROH133_RS00430 (AGROH133_02929) rimP 93661..94257 (-) 597 WP_003514299.1 ribosome maturation factor RimP -
  AGROH133_RS00440 (AGROH133_02930) - 94545..96173 (+) 1629 WP_013635225.1 MFS transporter -
  AGROH133_RS00445 (AGROH133_02941) - 96264..97502 (-) 1239 WP_049790309.1 lytic murein transglycosylase -
  AGROH133_RS00450 (AGROH133_02943) recR 97626..98231 (-) 606 WP_013635227.1 recombination mediator RecR Machinery gene
  AGROH133_RS00455 (AGROH133_02944) - 98269..98904 (+) 636 WP_013635228.1 MOSC domain-containing protein -
  AGROH133_RS00460 (AGROH133_02945) - 98918..99241 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  AGROH133_RS00465 (AGROH133_02946) - 99269..101146 (-) 1878 WP_013635229.1 DNA polymerase III subunit gamma/tau -
  AGROH133_RS00470 (AGROH133_02947) - 101471..101899 (+) 429 WP_161986907.1 HIT domain-containing protein -
  AGROH133_RS00475 (AGROH133_02948) nudC 101899..102861 (+) 963 WP_003514323.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21348.67 Da        Isoelectric Point: 6.2240

>NTDB_id=33533 AGROH133_RS00450 WP_013635227.1 97626..98231(-) (recR) [Agrobacterium tumefaciens]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DHLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=33533 AGROH133_RS00450 WP_013635227.1 97626..98231(-) (recR) [Agrobacterium tumefaciens]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAAAGTACCGGGGCTTGGGCCTCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAACAGCTTCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCGTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCCATGAATACCGCCTA
TCATGTGCTTGGTGGCACGCTGTCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATCAAGGGACTGATCGATCGCG
TCAGCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTACATCACC
GACCACCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGCTGGACTATCTCGA
TGAGGGCACATTGACGGCGGCGCTGCGCGCTCGCACAACGATCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(45-81)

Toprim domain (Toprim_4)

(83-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373

Multiple sequence alignment