Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BSN5_RS16085 Genome accession   NC_014976
Coordinates   3072320..3073036 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis BSn5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067320..3078036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS16070 (BSn5_15790) yfkQ 3067397..3068938 (-) 1542 WP_015715500.1 spore germination protein -
  BSN5_RS16075 (BSn5_15795) treP 3069131..3070543 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  BSN5_RS16080 (BSn5_15800) treC 3070614..3072299 (+) 1686 WP_015715501.1 alpha,alpha-phosphotrehalase -
  BSN5_RS16085 (BSn5_15805) treR 3072320..3073036 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  BSN5_RS16090 (BSn5_15810) hypO 3073176..3073841 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=33482 BSN5_RS16085 WP_003233679.1 3072320..3073036(+) (treR) [Bacillus subtilis BSn5]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=33482 BSN5_RS16085 WP_003233679.1 3072320..3073036(+) (treR) [Bacillus subtilis BSn5]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATTCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment