Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   SZO_RS07680 Genome accession   NC_012470
Coordinates   1646301..1647668 (-) Length   455 a.a.
NCBI ID   WP_012678370.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641301..1652668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS07660 (SZO_14700) nrdE 1641455..1643629 (-) 2175 WP_012678367.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  SZO_RS07665 (SZO_14710) nrdI 1643676..1644083 (-) 408 WP_012678368.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SZO_RS07670 (SZO_14720) nrdF 1644085..1645098 (-) 1014 WP_012678369.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  SZO_RS07675 (SZO_14721) - 1645556..1645792 (-) 237 WP_024273149.1 hypothetical protein -
  SZO_RS07680 (SZO_14730) comB 1646301..1647668 (-) 1368 WP_012678370.1 bacteriocin secretion accessory protein Regulator
  SZO_RS07685 (SZO_14740) comA 1647683..1649836 (-) 2154 WP_012678371.1 peptide cleavage/export ABC transporter ComA Regulator
  SZO_RS07690 (SZO_14744) - 1650063..1650230 (-) 168 WP_012515168.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  SZO_RS10580 - 1650253..1650399 (-) 147 WP_021320464.1 hypothetical protein -
  SZO_RS10585 (SZO_14743) - 1650413..1650571 (-) 159 WP_021320463.1 hypothetical protein -
  SZO_RS07695 (SZO_14742) - 1650684..1650824 (-) 141 WP_012515166.1 hypothetical protein -
  SZO_RS07705 (SZO_14750) - 1651177..1652070 (-) 894 WP_012678373.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.00 Da        Isoelectric Point: 5.1918

>NTDB_id=33481 SZO_RS07680 WP_012678370.1 1646301..1647668(-) (comB) [Streptococcus equi subsp. zooepidemicus]
MNNNILESAEFYNRRYHNFSSRVILPTLLLFLFGVFFLAFAKKEISIILTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSANVNQQN
ENVSSQNTAASNQQVEIENAIKGLTSQISDYQSVRSAIQNGTVVDLDNRAYSIYRSYLTQTSSLVDNTDKTAVINQFVAQ
IDSQINQLESSVAGYRIQHAGSGVQQSYSSTLESQLASLKAQSITKVEQELSALSNQITELEGTNKLQKNTSSKTSIVAN
EDGVLHLNQEFIGANIVPEGTIFAQVYPEMKKGTVVKITGYLPSTEISSISIGDTARFSTKDDNGETLDLIVKLSSIDNA
ATKTKNGNYFKVESKLQLKEKEAQLLKYGLEGKFILITGTKSYLNYYIDKFIGEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=33481 SZO_RS07680 WP_012678370.1 1646301..1647668(-) (comB) [Streptococcus equi subsp. zooepidemicus]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTGTCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTTAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACCTTATCAGCTAATGTAAATCAGCAAAAT
GAAAATGTCTCTTCACAAAATACTGCAGCTAGCAATCAGCAAGTAGAAATTGAGAATGCCATCAAAGGTCTCACAAGTCA
AATTTCAGATTATCAATCTGTTCGCTCGGCGATTCAAAATGGAACAGTGGTAGATCTTGATAATCGGGCTTATTCTATCT
ATAGGAGTTATCTAACTCAAACATCGAGTTTGGTAGATAATACTGATAAAACCGCTGTTATTAATCAATTTGTTGCTCAA
ATTGATAGTCAGATCAATCAACTAGAGAGTAGTGTAGCTGGTTATCGGATTCAGCATGCTGGTTCAGGAGTGCAACAATC
TTACTCTTCAACTCTAGAGAGTCAACTGGCTTCCTTAAAAGCGCAAAGCATAACCAAAGTTGAGCAAGAGTTGTCTGCTT
TGTCGAATCAAATTACAGAATTAGAGGGAACAAATAAACTTCAGAAGAACACATCATCTAAGACCTCTATAGTTGCCAAT
GAAGATGGTGTGTTGCATCTTAATCAGGAATTTATTGGTGCAAATATTGTTCCTGAAGGAACAATATTTGCTCAAGTTTA
TCCAGAAATGAAAAAAGGAACTGTTGTAAAAATCACAGGTTATTTACCTTCGACGGAAATATCAAGTATTTCTATTGGAG
ATACAGCACGATTTTCCACGAAAGATGATAATGGCGAAACTCTTGATTTAATAGTTAAATTATCTAGTATTGACAATGCT
GCAACTAAAACAAAAAATGGGAATTATTTTAAAGTTGAATCTAAGTTACAGCTTAAAGAAAAAGAAGCTCAATTATTGAA
ATATGGGCTTGAGGGTAAATTTATTTTAATTACGGGAACAAAAAGTTACTTGAATTACTATATTGATAAATTTATCGGTG
AGAAGTAA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(317-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus pneumoniae Rx1

50.221

99.341

0.499
  comB Streptococcus pneumoniae D39

50.221

99.341

0.499
  comB Streptococcus pneumoniae R6

50.221

99.341

0.499
  comB Streptococcus pneumoniae TIGR4

49.336

99.341

0.49
  comB Streptococcus mitis NCTC 12261

49.115

99.341

0.488
  comB Streptococcus mitis SK321

48.894

99.341

0.486
  comB Streptococcus gordonii str. Challis substr. CH1

47.672

99.121

0.473

Multiple sequence alignment