Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SZO_RS03140 Genome accession   NC_012470
Coordinates   664474..665184 (+) Length   236 a.a.
NCBI ID   WP_012677635.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 659474..670184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS03120 (SZO_05700) - 660301..660840 (+) 540 WP_012677631.1 hypothetical protein -
  SZO_RS03125 (SZO_05710) - 660837..661952 (+) 1116 WP_012677632.1 acetyl-CoA C-acyltransferase -
  SZO_RS03130 (SZO_05720) - 661942..663204 (+) 1263 WP_012677633.1 AMP-binding protein -
  SZO_RS03135 (SZO_05730) - 663249..664265 (+) 1017 WP_012677634.1 DUF3114 domain-containing protein -
  SZO_RS03140 (SZO_05740) vicR 664474..665184 (+) 711 WP_012677635.1 response regulator YycF Regulator
  SZO_RS03145 (SZO_05750) vicK 665177..666529 (+) 1353 WP_012677636.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SZO_RS03150 (SZO_05760) vicX 666533..667342 (+) 810 WP_021320992.1 MBL fold metallo-hydrolase Regulator
  SZO_RS03155 (SZO_05770) - 667533..669275 (+) 1743 WP_012677638.1 restriction endonuclease FokI C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26967.81 Da        Isoelectric Point: 4.9038

>NTDB_id=33464 SZO_RS03140 WP_012677635.1 664474..665184(+) (vicR) [Streptococcus equi subsp. zooepidemicus]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=33464 SZO_RS03140 WP_012677635.1 664474..665184(+) (vicR) [Streptococcus equi subsp. zooepidemicus]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAATTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTGACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAATTTGAATTGCTGCATCACCTGGCAAACCATATTGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTATGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTGTCCGTCGCCTGCGCGAAAAAATAGAGG
ATACACCGAGTCGTCCAGAGTATATTTTGACAAGACGTGGTGTTGGGTACTACATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

89.407

100

0.894
  micA Streptococcus pneumoniae Cp1015

78.541

98.729

0.775
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  covR Streptococcus salivarius strain HSISS4

43.966

98.305

0.432
  scnR Streptococcus mutans UA159

37.607

99.153

0.373

Multiple sequence alignment