Detailed information NTG0033466

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BSN5_RS13245
• Genome accession: NC_014976
• Coordinates: 2518924..2520045 (+)
• Length: 373 a.a.
• NCBI ID: WP_015715201.1
• Uniprot ID: -
• Organism: Bacillus subtilis BSn5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2513924..2525045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSN5_RS13225 (BSn5_12970)	ycdA	2513932..2514996 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
BSN5_RS22005	-	2515019..2515150 (-)	132	WP_003246334.1	hypothetical protein	-
BSN5_RS13230 (BSn5_12975)	ycdB	2515324..2516742 (+)	1419	WP_015715198.1	YcdB/YcdC domain-containing protein	-
BSN5_RS13235 (BSn5_12980)	ycdC	2516929..2518290 (+)	1362	WP_041520542.1	YcdB/YcdC domain-containing protein	-
BSN5_RS13240 (BSn5_12985)	cwlK	2518298..2518801 (-)	504	WP_015715200.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
BSN5_RS13245 (BSn5_12990)	rapF	2518924..2520045 (+)	1122	WP_015715201.1	response regulator aspartate phosphatase RapJ	Regulator
BSN5_RS13250 (BSn5_12995)	ycdF	2520152..2520928 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
BSN5_RS13255 (BSn5_13000)	ycdG	2520953..2522638 (+)	1686	WP_015715202.1	alpha-glucosidase	-
BSN5_RS13260 (BSn5_13005)	znuA	2522826..2523785 (+)	960	WP_015715203.1	metal ABC transporter substrate-binding protein	-
BSN5_RS13265 (BSn5_13010)	znuC	2523840..2524535 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44400.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=33466 BSN5_RS13245 WP_015715201.1 2518924..2520045(+) (rapF) [Bacillus subtilis BSn5]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=33466 BSN5_RS13245 WP_015715201.1 2518924..2520045(+) (rapF) [Bacillus subtilis BSn5]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGACAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405