Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | EPZ47_RS25420 | Genome accession | NZ_CP035088 |
| Coordinates | 5725693..5727039 (+) | Length | 448 a.a. |
| NCBI ID | WP_135847229.1 | Uniprot ID | - |
| Organism | Pseudomonas viciae strain 11K1 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5720693..5732039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPZ47_RS25395 (EPZ47_25390) | pgeF | 5720906..5721631 (-) | 726 | WP_135847225.1 | peptidoglycan editing factor PgeF | - |
| EPZ47_RS25400 (EPZ47_25395) | rluD | 5721628..5722590 (-) | 963 | WP_003205696.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| EPZ47_RS25405 (EPZ47_25400) | - | 5722742..5723758 (+) | 1017 | WP_135847226.1 | outer membrane protein assembly factor BamD | - |
| EPZ47_RS25410 (EPZ47_25405) | - | 5723884..5724117 (+) | 234 | WP_135847227.1 | PP0621 family protein | - |
| EPZ47_RS25415 (EPZ47_25410) | pilS | 5724107..5725696 (+) | 1590 | WP_135847228.1 | two-component system sensor histidine kinase NtrB | Regulator |
| EPZ47_RS25420 (EPZ47_25415) | pilR | 5725693..5727039 (+) | 1347 | WP_135847229.1 | sigma-54-dependent transcriptional regulator | Regulator |
| EPZ47_RS25425 (EPZ47_25420) | - | 5727125..5727490 (-) | 366 | WP_135847230.1 | DUF6124 family protein | - |
| EPZ47_RS25430 (EPZ47_25425) | thiO | 5728272..5729372 (-) | 1101 | WP_135847231.1 | glycine oxidase ThiO | - |
| EPZ47_RS25435 (EPZ47_25430) | - | 5729427..5729828 (-) | 402 | WP_135847232.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 50108.50 Da Isoelectric Point: 5.5774
>NTDB_id=334342 EPZ47_RS25420 WP_135847229.1 5725693..5727039(+) (pilR) [Pseudomonas viciae strain 11K1]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLTEAQALLAGETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPIATPVATIERCLLGDSPPMCSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAESSSAIDAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLTEAQALLAGETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPIATPVATIERCLLGDSPPMCSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAESSSAIDAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=334342 EPZ47_RS25420 WP_135847229.1 5725693..5727039(+) (pilR) [Pseudomonas viciae strain 11K1]
TTGAATACTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTACCGAGGCCCAAGCCCTGCTGGCGGGCGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAGCGTTACCCGCAACTCCCC
GTGGCAATGATTACGGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGCCTGCGAGAACTGGTCACCAGCGCCTTGCGCCTGCCGCCGATCGCCACGCCGGTCGCCACCA
TCGAGCGCTGCCTGCTGGGCGATTCCCCGCCGATGTGCAGCGTACGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGTGAGTCAGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCATGAACAGGGTCCCCGTTCCAA
CCAGGGGTTTGTGCCGGTCAACTGTGGGGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGCGGGACGCTGTTTCTCGATGAAGTGGCC
GACCTGCCCTTGGCAATGCAGGTCAAACTGTTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGTCAGG
ATCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGTGAGCGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGGCTGGCGGCCAACACCGGTAGCCCACCGGCCAGGTTGCATCCCCAGGCGTTGGACGCTCTGAG
GAACTACCGCTTCCCGGGCAACGTGCGGGAACTGGAAAATATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TTGAAGCTGACGACCTGCGCTTGGCCGAGAGCAGTAGTGCTATCGACGCCGGCAACCCCGATTTGATGCAGGTCGACAAC
CTGGAAGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTAA
TTGAATACTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTACCGAGGCCCAAGCCCTGCTGGCGGGCGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAGCGTTACCCGCAACTCCCC
GTGGCAATGATTACGGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGCCTGCGAGAACTGGTCACCAGCGCCTTGCGCCTGCCGCCGATCGCCACGCCGGTCGCCACCA
TCGAGCGCTGCCTGCTGGGCGATTCCCCGCCGATGTGCAGCGTACGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGTGAGTCAGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCATGAACAGGGTCCCCGTTCCAA
CCAGGGGTTTGTGCCGGTCAACTGTGGGGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGCGGGACGCTGTTTCTCGATGAAGTGGCC
GACCTGCCCTTGGCAATGCAGGTCAAACTGTTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGTCAGG
ATCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGTGAGCGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGGCTGGCGGCCAACACCGGTAGCCCACCGGCCAGGTTGCATCCCCAGGCGTTGGACGCTCTGAG
GAACTACCGCTTCCCGGGCAACGTGCGGGAACTGGAAAATATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TTGAAGCTGACGACCTGCGCTTGGCCGAGAGCAGTAGTGCTATCGACGCCGGCAACCCCGATTTGATGCAGGTCGACAAC
CTGGAAGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.054 |
99.107 |
0.783 |
| pilR | Acinetobacter baumannii strain A118 |
49.455 |
100 |
0.507 |