Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EPZ47_RS20605 Genome accession   NZ_CP035088
Coordinates   4722982..4723617 (-) Length   211 a.a.
NCBI ID   WP_178084272.1    Uniprot ID   -
Organism   Pseudomonas viciae strain 11K1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4717982..4728617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPZ47_RS20570 (EPZ47_20565) - 4718381..4718851 (-) 471 WP_135846478.1 (2Fe-2S)-binding protein -
  EPZ47_RS20575 (EPZ47_20570) murB 4719097..4720116 (-) 1020 WP_135846479.1 UDP-N-acetylmuramate dehydrogenase -
  EPZ47_RS20580 (EPZ47_20575) - 4720113..4720577 (-) 465 WP_135846480.1 low molecular weight protein-tyrosine-phosphatase -
  EPZ47_RS20585 (EPZ47_20580) kdsB 4720577..4721341 (-) 765 WP_135846481.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EPZ47_RS20590 (EPZ47_20585) - 4721338..4721523 (-) 186 WP_003179363.1 Trm112 family protein -
  EPZ47_RS20595 (EPZ47_20590) lpxK 4721547..4722557 (-) 1011 WP_135846482.1 tetraacyldisaccharide 4'-kinase -
  EPZ47_RS20600 (EPZ47_20595) - 4722557..4722985 (-) 429 WP_135846483.1 ExbD/TolR family protein -
  EPZ47_RS20605 (EPZ47_20600) exbB 4722982..4723617 (-) 636 WP_178084272.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EPZ47_RS20610 (EPZ47_20605) comA 4723714..4725960 (-) 2247 WP_135846485.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EPZ47_RS20615 (EPZ47_20610) - 4726106..4726621 (+) 516 WP_135846486.1 DUF2062 domain-containing protein -
  EPZ47_RS20620 (EPZ47_20615) - 4726786..4727565 (-) 780 WP_135846487.1 ABC transporter permease -
  EPZ47_RS20625 (EPZ47_20620) - 4727562..4728494 (-) 933 WP_135846488.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22810.95 Da        Isoelectric Point: 8.0840

>NTDB_id=334334 EPZ47_RS20605 WP_178084272.1 4722982..4723617(-) (exbB) [Pseudomonas viciae strain 11K1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=334334 EPZ47_RS20605 WP_178084272.1 4722982..4723617(-) (exbB) [Pseudomonas viciae strain 11K1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACTCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCCCTGGGGGAAATCCTCGCCGCGGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAACGCCCTGGGCACCATCGCTGCCATGTCCCCCCTGTTGGGCCTTCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCACCGGCTCCGGCATGACCACTAACGCTGCGGTGCTGGCGGGCGGTATTTCCAAGGCCTTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCTGCGGTGTTCTTCCATCGGTTCCTGCAACGACGCGTGGACGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.526

0.858

Multiple sequence alignment