Detailed information NTG0333761

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EO082_RS02840
• Genome accession: NZ_CP034967
• Coordinates: 591617..592204 (-)
• Length: 195 a.a.
• NCBI ID: WP_005340181.1
• Uniprot ID: A0A165S798
• Organism: Aeromonas veronii strain ZfB1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	577248..591452	591617..592204	flank	165

Gene organization within MGE regions

Location: 577248..592204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EO082_RS02780 (EO082_02800)	-	577248..577439 (+)	192	WP_017780887.1	hypothetical protein	-
EO082_RS02785 (EO082_02805)	tetR	577771..578406 (-)	636	WP_017780888.1	tetracycline resistance transcriptional repressor TetR	-
EO082_RS02790 (EO082_02810)	tet(E)	578487..579704 (+)	1218	WP_017780889.1	tetracycline efflux MFS transporter Tet(E)	-
EO082_RS02795 (EO082_02815)	-	579792..580460 (-)	669	WP_017780890.1	hypothetical protein	-
EO082_RS02800 (EO082_02820)	istA	580816..582357 (+)	1542	WP_164535986.1	IS21 family transposase	-
EO082_RS02805 (EO082_02825)	istB	582372..583127 (+)	756	WP_059296348.1	IS21-like element ISAs29 family helper ATPase IstB	-
EO082_RS21815 (EO082_02830)	-	583237..583398 (-)	162	Protein_542	IS5/IS1182 family transposase	-
EO082_RS02810 (EO082_02835)	-	583616..585778 (-)	2163	WP_164535987.1	AAA family ATPase	-
EO082_RS02815 (EO082_02840)	-	585775..586215 (-)	441	WP_201909211.1	VPA1267 family protein	-
EO082_RS02820 (EO082_02845)	-	586212..586691 (-)	480	WP_164535988.1	hypothetical protein	-
EO082_RS02825 (EO082_02850)	-	586679..588556 (-)	1878	WP_164535989.1	integrase	-
EO082_RS02830 (EO082_02855)	-	588566..590134 (-)	1569	WP_206525790.1	site-specific integrase	-
EO082_RS02835 (EO082_02860)	-	590127..591452 (-)	1326	WP_206525791.1	site-specific integrase	-
EO082_RS02840 (EO082_02865)	ssb	591617..592204 (-)	588	WP_005340181.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 195 a.a.
• Molecular weight: 21583.11 Da
• Isoelectric Point: 5.9301

>NTDB_id=333761 EO082_RS02840 WP_005340181.1 591617..592204(-) (ssb) [Aeromonas veronii strain ZfB1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 588 bp

>NTDB_id=333761 EO082_RS02840 WP_005340181.1 591617..592204(-) (ssb) [Aeromonas veronii strain ZfB1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAACAGCGCCCGGCACCAGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

3D structure

• AlphaFold DB: A0A165S798

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	69.347	100	0.708
ssb	Glaesserella parasuis strain SC1401	53.886	98.974	0.533
ssb	Neisseria meningitidis MC58	46.597	97.949	0.456
ssb	Neisseria gonorrhoeae MS11	46.842	97.436	0.456