Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ELZ14_RS22160 Genome accession   NZ_CP034725
Coordinates   4836504..4837139 (-) Length   211 a.a.
NCBI ID   WP_003204294.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain 3Re2-7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4831504..4842139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ14_RS22125 (ELZ14_22120) - 4831883..4832353 (-) 471 WP_003204280.1 (2Fe-2S)-binding protein -
  ELZ14_RS22130 (ELZ14_22125) murB 4832619..4833638 (-) 1020 WP_003204282.1 UDP-N-acetylmuramate dehydrogenase -
  ELZ14_RS22135 (ELZ14_22130) - 4833635..4834099 (-) 465 WP_003204283.1 low molecular weight protein-tyrosine-phosphatase -
  ELZ14_RS22140 (ELZ14_22135) kdsB 4834099..4834863 (-) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ELZ14_RS22145 (ELZ14_22140) - 4834860..4835045 (-) 186 WP_003179363.1 Trm112 family protein -
  ELZ14_RS22150 (ELZ14_22145) lpxK 4835069..4836079 (-) 1011 WP_003204290.1 tetraacyldisaccharide 4'-kinase -
  ELZ14_RS22155 (ELZ14_22150) - 4836079..4836507 (-) 429 WP_003204292.1 ExbD/TolR family protein -
  ELZ14_RS22160 (ELZ14_22155) exbB 4836504..4837139 (-) 636 WP_003204294.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ELZ14_RS22165 (ELZ14_22160) comA 4837237..4839483 (-) 2247 WP_003204296.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELZ14_RS22170 (ELZ14_22165) - 4839628..4840143 (+) 516 WP_003204298.1 DUF2062 domain-containing protein -
  ELZ14_RS22175 (ELZ14_22170) - 4840230..4841009 (-) 780 WP_003204300.1 ABC transporter permease -
  ELZ14_RS22180 (ELZ14_22175) - 4841012..4841944 (-) 933 WP_003204301.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.95 Da        Isoelectric Point: 8.0840

>NTDB_id=332767 ELZ14_RS22160 WP_003204294.1 4836504..4837139(-) (exbB) [Pseudomonas brassicacearum strain 3Re2-7]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=332767 ELZ14_RS22160 WP_003204294.1 4836504..4837139(-) (exbB) [Pseudomonas brassicacearum strain 3Re2-7]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCTTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCACCGGCTCCGGCATGACCACTAACGCCGCGGTGCTGGCGGGGGGGATCTCCAAGGCTTTGATCACCACCGCT
GCTGGCCTGATGGTCGGTATCCCTTCGGTGTTCTTCCACAGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment