Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EJF26_RS08460 Genome accession   NZ_CP034442
Coordinates   1653764..1654717 (+) Length   317 a.a.
NCBI ID   WP_000345148.1    Uniprot ID   A0A3R9K836
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648764..1659717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS08415 - 1648947..1649312 (+) 366 WP_000286403.1 DUF1033 family protein -
  EJF26_RS08420 comGA/cglA/cilD 1649376..1650317 (+) 942 WP_000249589.1 competence type IV pilus ATPase ComGA Machinery gene
  EJF26_RS08425 comGB/cglB 1650265..1651281 (+) 1017 WP_000355376.1 competence type IV pilus assembly protein ComGB Machinery gene
  EJF26_RS08430 comGC/cglC 1651283..1651606 (+) 324 WP_000735797.1 competence type IV pilus major pilin ComGC Machinery gene
  EJF26_RS08435 comGD/cglD 1651569..1652003 (+) 435 WP_001180063.1 competence type IV pilus minor pilin ComGD Machinery gene
  EJF26_RS08440 comGE/cglE 1651966..1652268 (+) 303 WP_000413366.1 competence type IV pilus minor pilin ComGE Machinery gene
  EJF26_RS08445 comGF/cglF 1652231..1652692 (+) 462 WP_000250704.1 competence type IV pilus minor pilin ComGF Machinery gene
  EJF26_RS08450 comGG/cglG 1652670..1653083 (+) 414 WP_000265655.1 competence type IV pilus minor pilin ComGG Machinery gene
  EJF26_RS08455 - 1653116..1653706 (+) 591 WP_000679780.1 class I SAM-dependent methyltransferase -
  EJF26_RS08460 comYH 1653764..1654717 (+) 954 WP_000345148.1 class I SAM-dependent methyltransferase Machinery gene
  EJF26_RS08465 - 1654767..1655957 (+) 1191 WP_000167801.1 acetate kinase -
  EJF26_RS08470 rnpA 1656117..1656488 (+) 372 WP_000748123.1 ribonuclease P protein component -
  EJF26_RS08475 - 1656463..1657275 (+) 813 WP_000728094.1 YidC/Oxa1 family membrane protein insertase -
  EJF26_RS08480 jag 1657293..1658282 (+) 990 WP_000242595.1 RNA-binding cell elongation regulator Jag/EloR -
  EJF26_RS08485 - 1658333..1658956 (+) 624 WP_000969605.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35526.58 Da        Isoelectric Point: 4.2011

>NTDB_id=331386 EJF26_RS08460 WP_000345148.1 1653764..1654717(+) (comYH) [Streptococcus oralis subsp. dentisani strain F0392]
MDFEKIEQAYTYLLENVQVIQSDLVTNFYDALVEQNSIYLDGETELEQVKENNQALKHLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELLDQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGIKYLKSNGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSIASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPAALMKFKENFQKWSQGTEN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=331386 EJF26_RS08460 WP_000345148.1 1653764..1654717(+) (comYH) [Streptococcus oralis subsp. dentisani strain F0392]
ATGGATTTTGAAAAAATAGAACAAGCTTATACGTATTTATTAGAAAATGTCCAAGTCATCCAAAGTGATCTGGTGACCAA
CTTTTATGATGCCTTGGTGGAGCAAAATAGTATCTACCTAGATGGTGAGACCGAGCTAGAACAGGTCAAAGAGAACAATC
AAGCCCTCAAGCACTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACACCGGATGCCATTGCCCTCCTCTTGGTACTTGTTGTGGAAGAATTGCTTGA
TCAAGAGGAAATTAGTATCCTCGAAATAGGTTCTGGTATGGGAATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTGGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCTAGTATGGCAGATGTGATCGGTTTACAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGTGACGTGGTCATCAGCGACTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAGCAAGGGATCAAGTACCTTAAGTCAAATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGCCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGATGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAT
CGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCATTTGTCTATCCTTTGACCA
GTCTGCAAGATCCAGCTGCATTAATGAAATTCAAAGAAAATTTTCAAAAATGGAGTCAAGGTACTGAAAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9K836

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

57.508

98.738

0.568
  comYH Streptococcus mutans UA159

57.188

98.738

0.565

Multiple sequence alignment