Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   EJF26_RS07470 Genome accession   NZ_CP034442
Coordinates   1487074..1488423 (+) Length   449 a.a.
NCBI ID   WP_001182201.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1482074..1493423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS07430 - 1482600..1482743 (+) 144 WP_000180834.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  EJF26_RS07435 - 1482759..1482917 (+) 159 WP_001056955.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  EJF26_RS09850 - 1483314..1483469 (+) 156 WP_000732133.1 hypothetical protein -
  EJF26_RS07440 - 1483508..1483720 (+) 213 WP_001016295.1 hypothetical protein -
  EJF26_RS07445 - 1483801..1483989 (+) 189 WP_000808741.1 hypothetical protein -
  EJF26_RS07450 - 1484014..1484223 (+) 210 WP_000869802.1 hypothetical protein -
  EJF26_RS10320 - 1484548..1484742 (+) 195 WP_001033679.1 hypothetical protein -
  EJF26_RS07465 comA 1484908..1487061 (+) 2154 WP_000668250.1 peptide cleavage/export ABC transporter ComA Regulator
  EJF26_RS07470 comB 1487074..1488423 (+) 1350 WP_001182201.1 competence pheromone export protein ComB Regulator
  EJF26_RS07475 purC 1488591..1489298 (+) 708 WP_000032091.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  EJF26_RS07480 - 1489355..1493080 (+) 3726 WP_000361224.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49758.70 Da        Isoelectric Point: 5.0359

>NTDB_id=331376 EJF26_RS07470 WP_001182201.1 1487074..1488423(+) (comB) [Streptococcus oralis subsp. dentisani strain F0392]
MQPEFLESAEFYHRRYHNFSSRVILPMSLLLVFLLGFAVFAEKEMSLSTRATVEPSRIIANIQSTSNQRIVANYLEENKL
VKQGDLLVQYQQGAEAVQVEAYTSQLEMFKDQKKQLGYLQSSLKEGSDQFPEADKFGYQEMFRDYLSQASSLRSNVSQQN
ASISSQNAAASQSQAEIGNLISQTQDKIQDYKTAKSAIETGAQLDSQNAAYSFYQTYKNQAGEDPQAKSQVIAQVDAQIA
QLESSLATYRVQYAGSGAQQAYATGLDSQLESLKSQHLVKVGQELTLLDQKILEAESGKKVQGGLLDKGKITASEDGVLH
LNPETSDSTMVAEGTLLAQLYPSLEKEGKAKLTAYLSSKDVARLKVGDSVRFTTTKDANKELVLVSAITNIDATATKTEK
GNFFKIEAETSLTPEQAEELRYGSEGRLTLITGKKSYLRYYLDQFLNRE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=331376 EJF26_RS07470 WP_001182201.1 1487074..1488423(+) (comB) [Streptococcus oralis subsp. dentisani strain F0392]
ATGCAACCAGAATTTTTAGAAAGTGCGGAGTTTTACCATCGTCGTTACCATAATTTTTCCAGTCGGGTGATTTTACCTAT
GTCACTTCTGCTCGTGTTTTTACTCGGTTTTGCAGTCTTTGCAGAGAAGGAGATGAGTTTGTCTACCAGAGCGACTGTCG
AACCTAGTCGGATCATTGCCAACATCCAGTCGACTAGCAATCAACGCATCGTGGCCAATTATCTAGAAGAAAACAAACTA
GTCAAGCAGGGAGATCTACTGGTTCAGTACCAGCAAGGGGCGGAAGCTGTTCAGGTTGAAGCATACACCAGTCAGTTGGA
GATGTTTAAGGATCAAAAAAAGCAGTTAGGGTATTTGCAATCCAGTTTGAAAGAGGGAAGTGATCAATTTCCAGAGGCGG
ATAAGTTTGGTTATCAGGAGATGTTTCGGGACTATCTCAGCCAAGCTAGTAGTCTTAGAAGTAATGTTTCTCAGCAAAAT
GCCAGCATCTCCTCTCAAAATGCGGCAGCAAGTCAGAGTCAGGCCGAGATTGGCAATCTTATCAGCCAAACGCAGGATAA
AATTCAAGATTACAAAACAGCTAAGTCGGCGATTGAAACAGGAGCTCAATTGGATAGTCAAAATGCGGCCTACTCTTTTT
ATCAGACCTATAAAAACCAAGCTGGAGAAGATCCGCAAGCTAAATCGCAAGTTATTGCACAGGTGGATGCACAAATCGCC
CAGCTAGAGTCTAGTTTAGCTACTTATCGTGTGCAGTATGCGGGATCTGGAGCTCAACAAGCCTATGCAACGGGACTGGA
TAGTCAACTTGAATCCCTCAAGTCCCAGCACCTAGTCAAAGTCGGTCAGGAGTTAACCCTTTTGGATCAGAAAATTTTAG
AAGCAGAGTCTGGTAAGAAAGTCCAAGGAGGTCTGCTGGACAAGGGGAAAATTACAGCAAGTGAGGATGGGGTGCTTCAC
CTTAATCCTGAAACCAGTGATTCTACCATGGTCGCAGAAGGAACCCTGCTAGCCCAACTCTACCCATCCTTGGAGAAAGA
AGGGAAAGCCAAACTCACAGCCTATCTCAGTTCAAAAGATGTTGCAAGGCTTAAGGTAGGTGATTCTGTTCGCTTTACTA
CAACCAAGGATGCCAACAAAGAGCTCGTTCTTGTTTCTGCGATTACGAATATTGATGCGACAGCTACTAAGACTGAAAAG
GGAAATTTCTTTAAAATAGAGGCGGAGACAAGTCTGACTCCTGAACAAGCAGAAGAGCTTCGCTACGGTTCAGAAGGACG
TTTGACACTAATCACAGGAAAGAAAAGTTATCTGCGATACTACTTAGATCAATTTTTGAACAGAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mitis SK321

81.514

100

0.815
  comB Streptococcus pneumoniae Rx1

81.069

100

0.811
  comB Streptococcus pneumoniae D39

81.069

100

0.811
  comB Streptococcus pneumoniae R6

81.069

100

0.811
  comB Streptococcus pneumoniae TIGR4

80.846

100

0.808
  comB Streptococcus mitis NCTC 12261

79.733

100

0.797
  comB Streptococcus gordonii str. Challis substr. CH1

54.667

100

0.548

Multiple sequence alignment