Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EJF26_RS07080 Genome accession   NZ_CP034442
Coordinates   1414656..1415318 (-) Length   220 a.a.
NCBI ID   WP_000995710.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409656..1420318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS07060 rplI 1410187..1410639 (-) 453 WP_000864203.1 50S ribosomal protein L9 -
  EJF26_RS07065 - 1410636..1412609 (-) 1974 WP_000739993.1 DHH family phosphoesterase -
  EJF26_RS07070 - 1412762..1413940 (-) 1179 WP_000656058.1 acetyl-CoA C-acetyltransferase -
  EJF26_RS07075 hpf 1414028..1414576 (-) 549 WP_000599119.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EJF26_RS07080 comFC/cflB 1414656..1415318 (-) 663 WP_000995710.1 ComF family protein Machinery gene
  EJF26_RS07085 comFA/cflA 1415315..1416613 (-) 1299 WP_000867716.1 DEAD/DEAH box helicase Machinery gene
  EJF26_RS07090 - 1416671..1417306 (+) 636 WP_000395764.1 YigZ family protein -
  EJF26_RS07095 cysK 1417462..1418388 (+) 927 WP_001029449.1 cysteine synthase A -
  EJF26_RS07100 tsf 1418503..1419543 (-) 1041 WP_000808061.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25185.95 Da        Isoelectric Point: 6.4745

>NTDB_id=331366 EJF26_RS07080 WP_000995710.1 1414656..1415318(-) (comFC/cflB) [Streptococcus oralis subsp. dentisani strain F0392]
MNCLLCGQSTKSDLTFSHLLLFKNEHNYLCSACDSTFEKIGEDHCPNCMKRGLSTTCQDCKLWCEDGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFTPVLADELKKYGDYEFVLIPLSPERLLERGFNQVEGLVEAAGFSFQDLLGKREEKASSS
KNRSERLATEIPFYIKTEAPLPKKILVIDDIYTTGATINRVKRLFEEAGVLEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=331366 EJF26_RS07080 WP_000995710.1 1414656..1415318(-) (comFC/cflB) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAATTGTTTATTATGTGGCCAGTCAACAAAGAGTGACTTGACATTTAGTCACCTCTTACTGTTTAAGAATGAGCACAA
CTATCTTTGCTCAGCTTGTGATTCTACTTTTGAGAAGATTGGTGAAGACCATTGTCCAAACTGCATGAAAAGAGGGTTGT
CAACAACGTGTCAAGATTGTAAACTTTGGTGTGAAGATGGGATTCAAGTTGATCATAAAGCAATCTTCACCTATAATCAA
GCTATGAAAGACTTCTTTAGTCGATATAAGTTTGATGGGGATTTTCTGCTTAGAAAGGTTTTTACTCCTGTACTTGCAGA
TGAGTTGAAAAAGTATGGAGACTATGAATTTGTGCTAATTCCTCTAAGTCCTGAAAGATTGCTTGAGAGGGGATTTAATC
AGGTTGAAGGTTTGGTTGAGGCAGCCGGATTTTCTTTTCAAGACTTACTAGGGAAAAGAGAAGAGAAGGCTAGTTCTTCT
AAGAATCGCTCAGAACGATTAGCTACGGAAATTCCCTTTTATATTAAAACGGAAGCCCCTCTTCCTAAGAAGATTTTGGT
TATTGATGACATTTATACGACAGGGGCGACTATCAATCGTGTGAAGCGACTTTTTGAAGAGGCAGGTGTTTTGGAAGTCA
AAACTTTTTCTCTTGTAAGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(164-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

75

100

0.75
  comFC/cflB Streptococcus mitis NCTC 12261

74.091

100

0.741
  comFC/cflB Streptococcus pneumoniae TIGR4

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae Rx1

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae D39

73.636

100

0.736
  comFC/cflB Streptococcus pneumoniae R6

73.636

100

0.736
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364

Multiple sequence alignment