Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   EJF26_RS01905 Genome accession   NZ_CP034442
Coordinates   352326..353174 (+) Length   282 a.a.
NCBI ID   WP_000705337.1    Uniprot ID   F9P0R1
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 347326..358174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS01890 - 348841..349569 (+) 729 WP_000133318.1 metallophosphoesterase family protein -
  EJF26_RS01895 lepA 349648..351471 (+) 1824 WP_001047159.1 translation elongation factor 4 -
  EJF26_RS01900 - 351622..352245 (+) 624 WP_000734758.1 hypothetical protein -
  EJF26_RS01905 dprA/cilB/dalA 352326..353174 (+) 849 WP_000705337.1 DNA-processing protein DprA Machinery gene
  EJF26_RS01910 topA 353292..355379 (+) 2088 WP_000179672.1 type I DNA topoisomerase -
  EJF26_RS01915 - 355485..355844 (+) 360 WP_001211119.1 YbaN family protein -
  EJF26_RS01920 - 355938..356570 (+) 633 WP_000638768.1 copper homeostasis protein CutC -
  EJF26_RS01925 - 356614..357270 (+) 657 WP_000461560.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31273.78 Da        Isoelectric Point: 5.2027

>NTDB_id=331334 EJF26_RS01905 WP_000705337.1 352326..353174(+) (dprA/cilB/dalA) [Streptococcus oralis subsp. dentisani strain F0392]
MKITNYEIYKLRKAGLTNQQILTVLEYDETVDQELLLGDIAEISGCRNPAVFMERYFQIDDTQLEKEFQKFPSFSILDDC
FPWDLSEIYDAPVLLFYKGNLDLLKFPKVAVVGSRSCSSQGAKSVQKVIQGLENELIVVSGLAKGIDTAAHMAALQNGGR
TIAVIGTGLDVFYPRANKRLQEHIGNHHLVLSEYGPGEEPLKFHFPARNRIIAGLCRGVIVAEARMRSGSLITCERAMEE
GRDVFAIPGNILDGHSDGCHHLIQEGAKLISSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=331334 EJF26_RS01905 WP_000705337.1 352326..353174(+) (dprA/cilB/dalA) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAAGATTACAAACTATGAGATTTACAAATTGAGAAAAGCTGGGCTGACCAATCAACAAATTTTAACTGTTCTTGAATA
TGACGAGACTGTAGATCAGGAGCTCTTGCTAGGTGATATTGCAGAAATTTCAGGATGCCGTAATCCTGCGGTCTTTATGG
AACGTTATTTCCAGATAGATGATACACAGTTGGAGAAGGAGTTCCAAAAATTTCCATCCTTCTCGATTCTTGATGACTGT
TTTCCTTGGGATCTGAGTGAAATTTATGATGCTCCAGTGCTCTTGTTTTATAAAGGAAATCTGGACTTGTTGAAGTTTCC
AAAGGTTGCTGTTGTAGGGAGTCGTTCATGTTCTAGTCAGGGGGCAAAGTCGGTTCAGAAAGTCATTCAAGGTTTGGAAA
ACGAGTTAATCGTGGTCAGTGGTTTAGCTAAAGGGATTGATACGGCTGCCCATATGGCTGCACTTCAGAATGGAGGAAGA
ACAATTGCTGTCATTGGAACAGGGTTGGATGTTTTTTATCCCCGAGCCAATAAACGTTTGCAGGAACACATTGGCAATCA
CCATTTGGTACTTAGCGAGTACGGACCTGGTGAGGAACCCTTGAAATTTCACTTTCCAGCTCGTAATCGCATCATTGCTG
GCCTTTGCCGTGGTGTGATTGTAGCAGAGGCAAGGATGCGTTCTGGTAGTCTTATTACTTGTGAGCGAGCTATGGAGGAA
GGGCGTGATGTCTTTGCCATTCCAGGAAACATTTTAGATGGCCATTCAGATGGCTGTCACCACCTGATCCAAGAGGGAGC
AAAGCTTATTAGCAGTGGTCAAGATGTGCTGGCTGAGTTTGAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P0R1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

91.135

100

0.911
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

90.78

100

0.908
  dprA/cilB/dalA Streptococcus pneumoniae D39

90.78

100

0.908
  dprA/cilB/dalA Streptococcus pneumoniae R6

90.78

100

0.908
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

90.78

100

0.908
  dprA/cilB/dalA Streptococcus mitis SK321

90.071

100

0.901
  dprA Streptococcus mutans UA159

60.714

99.291

0.603
  dprA Lactococcus lactis subsp. cremoris KW2

54.643

99.291

0.543

Multiple sequence alignment