Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D8X56_RS02425 Genome accession   NZ_CP034314
Coordinates   487558..487842 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482558..492842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS02400 (D8X56_02400) - 483156..484331 (-) 1176 WP_125301830.1 VirB8/TrbF family protein -
  D8X56_RS08180 (D8X56_02405) - 484324..484464 (-) 141 WP_050834008.1 hypothetical protein -
  D8X56_RS02410 (D8X56_02410) - 484461..487037 (-) 2577 WP_125301833.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  D8X56_RS02415 (D8X56_02415) - 487037..487273 (-) 237 WP_125301835.1 hypothetical protein -
  D8X56_RS02420 (D8X56_02420) comB3 487284..487547 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  D8X56_RS02425 (D8X56_02425) comB2 487558..487842 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  D8X56_RS02430 (D8X56_02430) - 487839..488318 (-) 480 WP_164503979.1 hypothetical protein -
  D8X56_RS02435 (D8X56_02435) - 488422..489210 (-) 789 WP_001140579.1 hypothetical protein -
  D8X56_RS02440 (D8X56_02440) - 489261..491155 (-) 1895 Protein_453 DEAD/DEAH box helicase family protein -
  D8X56_RS08395 - 491211..491345 (+) 135 WP_341845542.1 hypothetical protein -
  D8X56_RS08400 (D8X56_02445) - 491373..492008 (-) 636 WP_125301838.1 type I restriction endonuclease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=330632 D8X56_RS02425 WP_000736478.1 487558..487842(-) (comB2) [Helicobacter pylori strain HP42K]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=330632 D8X56_RS02425 WP_000736478.1 487558..487842(-) (comB2) [Helicobacter pylori strain HP42K]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment