Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EIJ81_RS05865 Genome accession   NZ_CP034240
Coordinates   870815..871120 (-) Length   101 a.a.
NCBI ID   WP_044583200.1    Uniprot ID   -
Organism   Aliivibrio salmonicida strain VS224     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 865815..876120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIJ81_RS05850 (EIJ81_05850) asnB 866763..868430 (+) 1668 WP_012549614.1 asparagine synthase B -
  EIJ81_RS05855 (EIJ81_05855) rfaH 868477..868974 (-) 498 WP_012549613.1 transcription/translation regulatory transformer protein RfaH -
  EIJ81_RS05860 (EIJ81_05860) - 869369..870724 (+) 1356 WP_012549612.1 peptide MFS transporter -
  EIJ81_RS05865 (EIJ81_05865) comEA 870815..871120 (-) 306 WP_044583200.1 ComEA family DNA-binding protein Machinery gene
  EIJ81_RS05870 (EIJ81_05870) ppiD 871317..873173 (-) 1857 WP_012549610.1 peptidylprolyl isomerase -
  EIJ81_RS05875 (EIJ81_05875) - 873375..873647 (-) 273 WP_023603608.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11165.01 Da        Isoelectric Point: 5.8692

>NTDB_id=330058 EIJ81_RS05865 WP_044583200.1 870815..871120(-) (comEA) [Aliivibrio salmonicida strain VS224]
MKVMSVFINTLLLSFCLFTSGVISASEKAIDKHEGIEIVVNINKADIEELDTLLIGVGESKAQAIIDYRNENGKFTTINE
LANVKGIGEKLIEKNKNRIKL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=330058 EIJ81_RS05865 WP_044583200.1 870815..871120(-) (comEA) [Aliivibrio salmonicida strain VS224]
ATGAAAGTTATGTCAGTGTTTATTAATACTCTGTTACTAAGTTTTTGCTTGTTTACTAGCGGTGTAATAAGTGCAAGTGA
AAAGGCCATTGATAAACATGAAGGTATTGAGATCGTTGTTAATATAAATAAAGCAGACATCGAAGAGTTAGATACATTAC
TTATTGGTGTGGGTGAATCTAAAGCTCAAGCGATTATAGATTACCGCAACGAAAATGGTAAATTCACAACGATTAATGAA
TTAGCTAATGTGAAAGGTATTGGTGAAAAATTGATCGAGAAGAATAAAAACCGTATTAAGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.608

96.04

0.515
  comEA Vibrio cholerae strain A1552

53.608

96.04

0.515
  comEA Vibrio parahaemolyticus RIMD 2210633

53.261

91.089

0.485
  comEA Vibrio campbellii strain DS40M4

50.538

92.079

0.465
  comEA/comE1 Glaesserella parasuis strain SC1401

38.053

100

0.426
  comEA Acinetobacter baylyi ADP1

48.101

78.218

0.376

Multiple sequence alignment