Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EH203_RS01005 Genome accession   NZ_CP034236
Coordinates   231467..232993 (-) Length   508 a.a.
NCBI ID   WP_161502020.1    Uniprot ID   -
Organism   Pectobacterium carotovorum subsp. carotovorum strain BP201601.1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 226467..237993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH203_RS00980 (EH203_00995) ytfR 226623..228143 (+) 1521 WP_010294688.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  EH203_RS00985 (EH203_01000) ytfT 228130..229140 (+) 1011 WP_010294686.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  EH203_RS00990 (EH203_01005) yjfF 229140..230102 (+) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  EH203_RS00995 (EH203_01010) hdfR 230124..230951 (-) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  EH203_RS01000 (EH203_01015) - 231072..231410 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  EH203_RS01005 (EH203_01020) comM 231467..232993 (-) 1527 WP_161502020.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EH203_RS01010 (EH203_01025) ilvL 233401..233499 (+) 99 WP_071531109.1 ilv operon leader peptide -
  EH203_RS01015 (EH203_01030) ilvG 233640..235286 (+) 1647 WP_039474303.1 acetolactate synthase 2 catalytic subunit -
  EH203_RS01020 (EH203_01035) ilvM 235366..235626 (+) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  EH203_RS01025 (EH203_01040) - 235652..236578 (+) 927 WP_010294671.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55533.18 Da        Isoelectric Point: 6.5676

>NTDB_id=330005 EH203_RS01005 WP_161502020.1 231467..232993(-) (comM) [Pectobacterium carotovorum subsp. carotovorum strain BP201601.1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPSLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLSDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=330005 EH203_RS01005 WP_161502020.1 231467..232993(-) (comM) [Pectobacterium carotovorum subsp. carotovorum strain BP201601.1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGCTTACCTGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTTA
TCAATTGTGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCACAGGGTGAAGCGCTAATGGCTGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGGGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACCCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCGAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCATA
ACTTGCTCTTACTGGGGCCACCGGGAACCGGGAAAACCATGCTGGCAAGCCGATTAGGCAATCTGATGCCGTCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCTATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
ATTCAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAGATCTCGC
TCGCCCACAACGGCGTGCTATTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTTTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
CCCCAGCCCTTCAGGCCACTATCAGGGCGTTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTGCCTCCGGGGGTGTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAACATTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATAGCTGACCTCAGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.019

100

0.467

Multiple sequence alignment