Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EEI45_RS02220 Genome accession   NZ_CP034234
Coordinates   449981..450454 (+) Length   157 a.a.
NCBI ID   WP_125163979.1    Uniprot ID   -
Organism   Erysipelothrix piscisicarius strain 15TAL0474     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 444981..455454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEI45_RS02190 (EEI45_02200) lysS 445274..446758 (+) 1485 WP_125163975.1 lysine--tRNA ligase -
  EEI45_RS02195 (EEI45_02205) - 446796..447335 (-) 540 WP_125163976.1 chromate transporter -
  EEI45_RS02200 (EEI45_02210) - 447319..447882 (-) 564 WP_125163977.1 chromate transporter -
  EEI45_RS02205 (EEI45_02215) - 447976..448827 (+) 852 WP_125163978.1 LysR family transcriptional regulator -
  EEI45_RS02210 (EEI45_02220) - 448911..449525 (+) 615 WP_228410454.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EEI45_RS02215 (EEI45_02225) rpsF 449665..449955 (+) 291 WP_018580287.1 30S ribosomal protein S6 -
  EEI45_RS02220 (EEI45_02230) ssb 449981..450454 (+) 474 WP_125163979.1 single-stranded DNA-binding protein Machinery gene
  EEI45_RS02225 (EEI45_02235) rpsR 450472..450705 (+) 234 WP_003774357.1 30S ribosomal protein S18 -
  EEI45_RS02230 (EEI45_02240) - 450759..451298 (+) 540 WP_125163980.1 DUF2232 domain-containing protein -
  EEI45_RS08895 - 451345..452022 (+) 678 WP_228410455.1 hypothetical protein -
  EEI45_RS08900 - 452376..453299 (+) 924 WP_267128157.1 DHH family phosphoesterase -
  EEI45_RS02240 (EEI45_02250) rplI 453301..453747 (+) 447 WP_125163981.1 50S ribosomal protein L9 -
  EEI45_RS02245 (EEI45_02255) dnaB 453759..455129 (+) 1371 WP_125163982.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17532.33 Da        Isoelectric Point: 4.5082

>NTDB_id=329970 EEI45_RS02220 WP_125163979.1 449981..450454(+) (ssb) [Erysipelothrix piscisicarius strain 15TAL0474]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNHTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQGGNQGGSSYTPSYQPDPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=329970 EEI45_RS02220 WP_125163979.1 449981..450454(+) (ssb) [Erysipelothrix piscisicarius strain 15TAL0474]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACAGGTAAATCAGTCGT
ATCATTTACTGTAGCGTGCAACCGCCGCTTCGGTCAACAAGATGAAACTGATTTCATTAACTGTGTGGCTTGGAATCATA
CAGCTGATTTCATGGCGAATTACTTGCTAAAGGGTGCTTTAGTAGGGCTAGAAGGTCGAATTCAATCGAGATCATACGAA
GATGCTACTGGCAAACGTGTGTATGTTCAAGAGGTAGTTGTGGATACACTTCAGTCACTTGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAGGCGGAAATCAAGGTGGATCAAGTTATACACCTTCATATCAAC
CAGATCCTGAACCATCATTCTCAATGGATGATGAACCTGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

35.754

100

0.408
  ssb Neisseria gonorrhoeae MS11

34.831

100

0.395
  ssb Vibrio cholerae strain A1552

31.694

100

0.369

Multiple sequence alignment