Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   SP670_RS10780 Genome accession   NC_014498
Coordinates   1989117..1989521 (-) Length   134 a.a.
NCBI ID   WP_000588005.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1984117..1994521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS10740 (SP670_2122) rnpA 1984539..1984910 (-) 372 WP_000739241.1 ribonuclease P protein component -
  SP670_RS10745 (SP670_2123) - 1985058..1986248 (-) 1191 WP_000167766.1 acetate kinase -
  SP670_RS10750 (SP670_2124) comGH 1986299..1987252 (-) 954 WP_000345085.1 class I SAM-dependent methyltransferase Machinery gene
  SP670_RS13660 - 1987313..1987900 (-) 588 Protein_2022 class I SAM-dependent methyltransferase -
  SP670_RS10765 (SP670_2127) comGG/cglG 1988037..1988450 (-) 414 WP_000265619.1 competence type IV pilus minor pilin ComGG Machinery gene
  SP670_RS10770 (SP670_2128) comGF/cglF 1988428..1988889 (-) 462 WP_000250523.1 competence type IV pilus minor pilin ComGF Machinery gene
  SP670_RS10775 (SP670_2129) comGE/cglE 1988852..1989154 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SP670_RS10780 (SP670_2130) comGD/cglD 1989117..1989521 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  SP670_RS10785 (SP670_2131) comGC/cglC 1989514..1989780 (-) 267 WP_000962026.1 competence type IV pilus major pilin ComGC Machinery gene
  SP670_RS10790 (SP670_2132) - 1989782..1990039 (-) 258 WP_000698513.1 hypothetical protein -
  SP670_RS10795 (SP670_2133) - 1990271..1991227 (-) 957 WP_000350474.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SP670_RS10800 (SP670_2134) - 1991227..1991562 (-) 336 WP_001186218.1 phage holin -
  SP670_RS10805 (SP670_2135) - 1991566..1991865 (-) 300 WP_001811580.1 hypothetical protein -
  SP670_RS10810 (SP670_2136) - 1991874..1992224 (-) 351 WP_000852245.1 hypothetical protein -
  SP670_RS10815 (SP670_2137) - 1992227..1992430 (-) 204 WP_001091115.1 hypothetical protein -
  SP670_RS14675 (SP670_2138) - 1992411..1992527 (-) 117 WP_001063633.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14636.81 Da        Isoelectric Point: 10.2164

>NTDB_id=32874 SP670_RS10780 WP_000588005.1 1989117..1989521(-) (comGD/cglD) [Streptococcus pneumoniae 670-6B]
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTISNGSQKLPV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=32874 SP670_RS10780 WP_000588005.1 1989117..1989521(-) (comGD/cglD) [Streptococcus pneumoniae 670-6B]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGATTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGCCCCATCAGGCCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae Rx1

96.269

100

0.963
  comGD/cglD Streptococcus pneumoniae D39

96.269

100

0.963
  comGD/cglD Streptococcus pneumoniae R6

96.269

100

0.963
  comGD/cglD Streptococcus mitis NCTC 12261

96.241

99.254

0.955
  comGD/cglD Streptococcus mitis SK321

95.522

100

0.955
  comGD Streptococcus gordonii str. Challis substr. CH1

59.055

94.776

0.56
  comGD Streptococcus mutans UA140

50

95.522

0.478
  comGD Streptococcus mutans UA159

50

95.522

0.478

Multiple sequence alignment