Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VV7356_RS23450 Genome accession   NZ_CP041683
Coordinates   5168620..5170143 (-) Length   507 a.a.
NCBI ID   WP_026130556.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5163620..5175143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS23430 (VV7356_24030) - 5164907..5165893 (+) 987 WP_017789623.1 serine/threonine protein kinase -
  VV7356_RS23435 (VV7356_24035) - 5165926..5166531 (+) 606 WP_017789622.1 thiol:disulfide interchange protein DsbA/DsbL -
  VV7356_RS23440 (VV7356_24040) - 5166583..5167464 (-) 882 WP_017789621.1 acyltransferase -
  VV7356_RS23445 (VV7356_24045) - 5167607..5168581 (+) 975 WP_017789620.1 DUF2860 domain-containing protein -
  VV7356_RS23450 (VV7356_24050) comM 5168620..5170143 (-) 1524 WP_026130556.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VV7356_RS23455 (VV7356_24055) ilvG 5170613..5172259 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  VV7356_RS23460 (VV7356_24060) ilvM 5172271..5172555 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  VV7356_RS23465 (VV7356_24065) ilvE 5172567..5173505 (+) 939 WP_011151436.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54869.08 Da        Isoelectric Point: 8.7918

>NTDB_id=327971 VV7356_RS23450 WP_026130556.1 5168620..5170143(-) (comM) [Vibrio vulnificus strain 7356]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFIGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAYLCGQQALALHQAPQREKPAQHHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=327971 VV7356_RS23450 WP_026130556.1 5168620..5170143(-) (comM) [Vibrio vulnificus strain 7356]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCTGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCCGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTAT
CGGTGAGTTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTCCTGCCAGCCGCACTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTGCCTCATGCTAATGGGGATCAAGCCGCCTTGGTTGGCAAAAACATGCATAAATCGGCGTGCTCACTG
ATTGAAGTTTGTGCTTACTTATGTGGTCAGCAAGCGCTGGCTTTGCATCAGGCGCCTCAGCGAGAAAAACCCGCGCAACA
TCATCGTGATTTACAAGACATCATAGGCCAGCAGCAAGGTAAGCGTGCGTTGGAAATTGCCGCTGCGGGCAATCACAATT
TACTTTTTTTAGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGCTTGCGAGATCTGCTGCCTGAAATGAGTGAG
GAAGAAGCGATGGAAACGGCGGCGGTGGCTTCTTTAACACAAAGTGATATCAATGAGCATAATTGGAAGCAACGGCCGTT
TCGCGCACCGCATCACTCAAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCACGTCCTGGAGAAATCTCACTCG
CCCACAACGGCTTACTATTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAACCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCTACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGCACATTGGCGGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTAAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTGAATGC
TCTGTTAGGAAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCTGATTTAGAAGGCGCACCTCAG
ATAACGCGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae O1 biovar El Tor strain E7946

83.826

100

0.838
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.8

98.619

0.501
  comM Legionella pneumophila strain ERS1305867

50.8

98.619

0.501
  comM Acinetobacter baylyi ADP1

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment