Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   VV7356_RS00605 Genome accession   NZ_CP041683
Coordinates   127588..129087 (+) Length   499 a.a.
NCBI ID   WP_011149205.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122588..134087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS00585 (VV7356_00590) hslO 122978..123853 (-) 876 WP_017420504.1 Hsp33 family molecular chaperone HslO -
  VV7356_RS00590 (VV7356_00595) hslR 123885..124271 (-) 387 WP_026130547.1 ribosome-associated heat shock protein Hsp15 -
  VV7356_RS00595 (VV7356_00600) gspC 124655..125530 (+) 876 WP_157401904.1 type II secretion system protein GspC -
  VV7356_RS00600 (VV7356_00605) gspD 125567..127588 (+) 2022 WP_017789553.1 type II secretion system secretin GspD -
  VV7356_RS00605 (VV7356_00610) pilB/pilB1 127588..129087 (+) 1500 WP_011149205.1 type II secretion system ATPase GspE Machinery gene
  VV7356_RS00610 (VV7356_00615) gspF 129087..130304 (+) 1218 WP_011078942.1 type II secretion system inner membrane protein GspF -
  VV7356_RS00615 (VV7356_00620) gspG 130358..130801 (+) 444 WP_017420501.1 type II secretion system major pseudopilin GspG -
  VV7356_RS00620 (VV7356_00625) gspH 130728..131432 (+) 705 WP_017420500.1 type II secretion system minor pseudopilin GspH -
  VV7356_RS00625 (VV7356_00630) gspI 131425..131787 (+) 363 WP_017789552.1 type II secretion system minor pseudopilin GspI -
  VV7356_RS00630 (VV7356_00635) gspJ 131774..132475 (+) 702 WP_017789551.1 type II secretion system minor pseudopilin GspJ -
  VV7356_RS00635 (VV7356_00640) gspK 132468..133490 (+) 1023 WP_026130546.1 type II secretion system minor pseudopilin GspK -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55860.17 Da        Isoelectric Point: 6.0826

>NTDB_id=327880 VV7356_RS00605 WP_011149205.1 127588..129087(+) (pilB/pilB1) [Vibrio vulnificus strain 7356]
MVDILDTAPSYRRLPFSFANRFKMVLEIEHPERPPVLYYVEPLNAQALVEVRRVLKQTFVPQAIAAEAFEKKLTEAYQRD
SSEARQLMEDIGSDDDFFSLAEELPQDEDLLETEDDAPIIKLINAMLGEAIKEGASDIHIETFEKILSIRFRVDGVLRDV
LSPSRKLAPLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTPV
NHDNFRHLISRPHGIILVTGPTGSGKSTTLYAGLQELNSNERNILTVEDPIEFDIDGIGQTQVNPKVDMTFARGLRAILR
QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAITRLRDMGIEPFLISSSLLGVLAQRLVRTLCQDCKEPY
EADKEQRKLFGAKKKDALTLYRAKGCEKCNHKGYRGRTGIHELLMVDDKVQELIHAEAGEQAMDKYIREHTPSIRSDGLD
KVLQGVTSLEEVMRVTKES

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=327880 VV7356_RS00605 WP_011149205.1 127588..129087(+) (pilB/pilB1) [Vibrio vulnificus strain 7356]
ATGGTAGATATACTGGATACGGCGCCATCGTATCGCCGTTTACCGTTTAGTTTTGCTAACCGCTTTAAAATGGTGCTGGA
AATCGAGCATCCAGAAAGGCCGCCGGTACTTTACTACGTTGAGCCTCTCAATGCGCAGGCGTTAGTTGAAGTGCGTCGTG
TGCTCAAACAGACGTTTGTCCCTCAAGCCATTGCCGCTGAGGCGTTTGAAAAAAAACTGACCGAAGCGTACCAACGCGAC
TCGTCAGAAGCGCGCCAGTTGATGGAAGACATTGGCTCGGATGATGACTTCTTCTCTTTGGCCGAAGAGCTGCCGCAAGA
TGAAGATTTGCTCGAAACGGAAGACGATGCACCGATCATCAAATTGATCAACGCCATGTTGGGCGAAGCGATCAAAGAAG
GTGCGTCGGATATTCACATCGAAACGTTTGAGAAAATTTTGTCGATTCGTTTCCGTGTCGATGGTGTTTTACGCGATGTG
TTGTCTCCGAGCCGCAAACTGGCGCCGCTGTTGGTCTCTCGCGTTAAAGTCATGGCCAAACTCGATATCGCGGAAAAACG
AGTGCCACAAGATGGTCGTATTTCGCTTCGTATCGGTGGTCGCGCGGTCGATGTGCGTGTGTCGACCATGCCTTCATCAC
ACGGAGAACGTGTGGTGATGCGTTTGCTCGACAAAAACGCCACTCGCCTTGACCTGCATAGCTTAGGCATGACGCCGGTG
AACCACGACAATTTCCGTCACCTTATCTCGCGTCCTCACGGCATTATTTTGGTCACCGGTCCAACCGGTTCGGGTAAATC
CACCACCTTGTACGCTGGCCTGCAAGAGCTGAACAGCAACGAGCGCAACATCTTAACGGTGGAAGACCCGATCGAATTTG
ATATCGATGGTATCGGCCAAACCCAAGTAAACCCAAAAGTCGACATGACCTTTGCACGTGGTCTGCGAGCTATTTTGCGT
CAAGACCCAGACGTGGTGATGGTCGGGGAAATTCGTGACTTGGAAACCGCGCAAATTGCCGTACAAGCATCGCTGACCGG
TCACTTGGTGATGTCAACTTTGCACACCAACACTGCTGTAGGTGCGATTACCCGTCTGCGTGACATGGGCATTGAGCCTT
TTTTGATCTCTTCTTCACTGCTGGGCGTGCTGGCTCAGCGCTTGGTGCGGACCTTATGCCAAGACTGTAAAGAGCCGTAT
GAAGCCGACAAAGAGCAGCGCAAACTGTTTGGCGCGAAGAAGAAAGATGCGCTGACTTTATATCGTGCCAAGGGATGTGA
AAAATGTAACCACAAAGGTTATCGTGGCCGTACGGGTATCCATGAGCTGTTGATGGTGGACGATAAAGTCCAAGAGCTGA
TCCATGCTGAGGCGGGAGAGCAGGCGATGGACAAATACATTCGTGAACATACCCCAAGCATTCGCAGCGATGGTTTAGAC
AAAGTGTTGCAAGGCGTGACCTCACTGGAAGAAGTGATGCGCGTGACCAAGGAATCTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(125-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

42.966

100

0.453
  pilF Thermus thermophilus HB27

44.915

94.589

0.425
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.51

98.998

0.421
  pilB Acinetobacter baumannii D1279779

42.292

96.192

0.407
  pilB Legionella pneumophila strain ERS1305867

46.934

84.97

0.399
  pilB Vibrio parahaemolyticus RIMD 2210633

46.348

79.559

0.369
  pilB Vibrio campbellii strain DS40M4

44.853

81.764

0.367
  pilB Vibrio cholerae strain A1552

45.96

79.359

0.365
  pilF Neisseria gonorrhoeae MS11

46.193

78.958

0.365
  pilB Acinetobacter baylyi ADP1

46.41

78.156

0.363

Multiple sequence alignment