Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FNW97_RS20565 Genome accession   NZ_CP041627
Coordinates   4111455..4112975 (-) Length   506 a.a.
NCBI ID   WP_047603352.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4106455..4117975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW97_RS20555 (FNW97_20555) hdfR 4110134..4110973 (-) 840 WP_000379245.1 HTH-type transcriptional regulator HdfR -
  FNW97_RS20560 (FNW97_20560) maoP 4111092..4111430 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  FNW97_RS20565 (FNW97_20565) comM 4111455..4112975 (-) 1521 WP_047603352.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FNW97_RS20570 (FNW97_20570) ilvL 4113328..4113426 (+) 99 WP_001311244.1 ilv operon leader peptide -
  FNW97_RS20575 (FNW97_20575) ilvX 4113513..4113563 (+) 51 WP_001387183.1 peptide IlvX -
  FNW97_RS20580 (FNW97_20580) ilvG 4113566..4115212 (+) 1647 WP_001012608.1 acetolactate synthase 2 catalytic subunit -
  FNW97_RS20585 (FNW97_20585) ilvM 4115209..4115472 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  FNW97_RS20590 (FNW97_20590) ilvE 4115492..4116421 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55295.48 Da        Isoelectric Point: 7.6191

>NTDB_id=327503 FNW97_RS20565 WP_047603352.1 4111455..4112975(-) (comM) [Escherichia coli strain ETEC6]
MSRSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGEMALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITTAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVDGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=327503 FNW97_RS20565 WP_047603352.1 4111455..4112975(-) (comM) [Escherichia coli strain ETEC6]
ATGTCACGGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCGATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTGGCTCCAGCTGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAAATGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAAGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTATCGGTCAGGAACAAGGAAAGCGAGGACTGGAAATTACCACTGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGTGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCATCGTTAACTGCGATGGTAGACGGTGGCGCAATTCCAGGGCCCGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGGAACACTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGAGCGATTGACCGTTTGCTCATCCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Vibrio cholerae O1 biovar El Tor strain E7946

58.765

99.209

0.583
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Acinetobacter baylyi ADP1

48.394

98.419

0.476
  comM Legionella pneumophila str. Paris

47.189

98.419

0.464
  comM Legionella pneumophila strain ERS1305867

47.189

98.419

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.437