Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | EG882_RS11340 | Genome accession | NZ_CP033967 |
| Coordinates | 2148821..2149891 (+) | Length | 356 a.a. |
| NCBI ID | WP_124692840.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain 1B-23 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2143821..2154891
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG882_RS11310 (EG882_11310) | - | 2144294..2144539 (-) | 246 | WP_003153078.1 | DUF2626 domain-containing protein | - |
| EG882_RS11315 (EG882_11315) | - | 2144776..2145156 (+) | 381 | WP_003153079.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| EG882_RS11325 (EG882_11325) | - | 2145363..2146193 (+) | 831 | WP_015240214.1 | STAS domain-containing protein | - |
| EG882_RS11330 (EG882_11330) | - | 2146231..2147532 (-) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| EG882_RS11335 (EG882_11335) | - | 2147678..2148628 (+) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| EG882_RS11340 (EG882_11340) | comGA | 2148821..2149891 (+) | 1071 | WP_124692840.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EG882_RS11345 (EG882_11345) | comGB | 2149878..2150915 (+) | 1038 | WP_124692841.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EG882_RS11350 (EG882_11350) | comGC | 2150962..2151228 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EG882_RS11355 (EG882_11355) | comGD | 2151218..2151655 (+) | 438 | WP_015240210.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EG882_RS11360 (EG882_11360) | comGE | 2151639..2151953 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| EG882_RS11365 (EG882_11365) | comGF | 2151862..2152362 (+) | 501 | WP_256994853.1 | competence type IV pilus minor pilin ComGF | - |
| EG882_RS11370 (EG882_11370) | comGG | 2152363..2152740 (+) | 378 | WP_015240208.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| EG882_RS11375 (EG882_11375) | - | 2152797..2152976 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| EG882_RS11380 (EG882_11380) | - | 2153016..2153345 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| EG882_RS11385 (EG882_11385) | tapA | 2153604..2154275 (+) | 672 | WP_124692843.1 | amyloid fiber anchoring/assembly protein TapA | - |
| EG882_RS11390 (EG882_11390) | - | 2154247..2154831 (+) | 585 | WP_015240205.1 | signal peptidase I | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40529.85 Da Isoelectric Point: 9.4729
>NTDB_id=327473 EG882_RS11340 WP_124692840.1 2148821..2149891(+) (comGA) [Bacillus velezensis strain 1B-23]
MENIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGK
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
MENIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGK
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
Nucleotide
Download Length: 1071 bp
>NTDB_id=327473 EG882_RS11340 WP_124692840.1 2148821..2149891(+) (comGA) [Bacillus velezensis strain 1B-23]
GTGGAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTAATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGTCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAAAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATTGCACTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
GTGGAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTAATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGTCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAAAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATTGCACTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
82.022 |
100 |
0.82 |
| pilB | Glaesserella parasuis strain SC1401 |
38.793 |
97.753 |
0.379 |
| pilF | Thermus thermophilus HB27 |
37.892 |
98.596 |
0.374 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
38.123 |
95.787 |
0.365 |