Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FNW97_RS15000 Genome accession   NZ_CP041627
Coordinates   2976553..2977068 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ETEC6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2971553..2982068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW97_RS14975 (FNW97_14975) ygaZ 2971952..2972689 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  FNW97_RS14980 (FNW97_14980) ygaH 2972679..2973014 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  FNW97_RS14985 (FNW97_14985) emrR 2973105..2973635 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FNW97_RS14990 (FNW97_14990) emrA 2973762..2974934 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FNW97_RS14995 (FNW97_14995) emrB 2974951..2976489 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FNW97_RS15000 (FNW97_15000) luxS 2976553..2977068 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FNW97_RS15005 (FNW97_15005) gshA 2977218..2978774 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FNW97_RS15010 (FNW97_15010) yqaA 2978847..2979275 (-) 429 WP_001287454.1 YqaA family protein -
  FNW97_RS15015 (FNW97_15015) yqaB 2979272..2979838 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FNW97_RS15040 (FNW97_15040) csrA 2981021..2981206 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=327475 FNW97_RS15000 WP_001130211.1 2976553..2977068(-) (luxS) [Escherichia coli strain ETEC6]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=327475 FNW97_RS15000 WP_001130211.1 2976553..2977068(-) (luxS) [Escherichia coli strain ETEC6]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment