Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FNW97_RS14695 Genome accession   NZ_CP041627
Coordinates   2919185..2919922 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ETEC6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2914185..2924922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW97_RS14680 (FNW97_14680) clpC 2914639..2917212 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FNW97_RS14685 (FNW97_14685) yfiH 2917342..2918073 (-) 732 WP_047603493.1 purine nucleoside phosphorylase YfiH -
  FNW97_RS14690 (FNW97_14690) rluD 2918070..2919050 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FNW97_RS14695 (FNW97_14695) comL 2919185..2919922 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FNW97_RS14700 (FNW97_14700) raiA 2920193..2920534 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FNW97_RS14705 (FNW97_14705) pheL 2920638..2920685 (+) 48 WP_010723158.1 phe operon leader peptide -
  FNW97_RS14710 (FNW97_14710) pheA 2920784..2921944 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  FNW97_RS14715 (FNW97_14715) tyrA 2921987..2923108 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FNW97_RS14720 (FNW97_14720) aroF 2923119..2924189 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FNW97_RS14725 (FNW97_14725) yfiL 2924399..2924764 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=327474 FNW97_RS14695 WP_000197686.1 2919185..2919922(+) (comL) [Escherichia coli strain ETEC6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=327474 FNW97_RS14695 WP_000197686.1 2919185..2919922(+) (comL) [Escherichia coli strain ETEC6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment