NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	FNV62_RS07910	Genome accession	NZ_CP041610
Coordinates	1647553..1648206 (+)	Length	217 a.a.
NCBI ID	WP_054233834.1	Uniprot ID	A0A250VJP6
Organism	Streptomyces sp. RLB3-17
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1642553..1653206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNV62_RS55570	-	1644102..1645111 (-)	1010	Protein_1622	IS110 family transposase	-
FNV62_RS07900 (FNV62_08045)	-	1645476..1645958 (-)	483	WP_144314933.1	VOC family protein	-
FNV62_RS07905 (FNV62_08050)	-	1646117..1647340 (+)	1224	WP_144314935.1	epoxide hydrolase family protein	-
FNV62_RS07910 (FNV62_08055)	clpP	1647553..1648206 (+)	654	WP_054233834.1	ATP-dependent Clp protease proteolytic subunit	Regulator
FNV62_RS07915 (FNV62_08060)	clpP	1648208..1648810 (+)	603	WP_144314937.1	ClpP family protease	Regulator
FNV62_RS57525 (FNV62_08065)	-	1648880..1649353 (-)	474	WP_097283232.1	helix-turn-helix domain-containing protein	-
FNV62_RS07925 (FNV62_08070)	-	1649441..1649962 (-)	522	WP_079089687.1	DinB family protein	-
FNV62_RS07930 (FNV62_08075)	-	1650237..1650464 (+)	228	WP_054233831.1	DUF5133 domain-containing protein	-
FNV62_RS07935 (FNV62_08080)	-	1650574..1651917 (-)	1344	WP_164657622.1	diacylglycerol/lipid kinase family protein	-
FNV62_RS07940 (FNV62_08085)	-	1652131..1652574 (-)	444	WP_054233829.1	response regulator	-

Sequence

Protein

Download Length: 217 a.a. Molecular weight: 23611.63 Da Isoelectric Point: 5.0747

                                >NTDB_id=327175 FNV62_RS07910 WP_054233834.1 1647553..1648206(+) (clpP) [Streptomyces sp. RLB3-17]

MTPLITGRYPAHAPRAEDGDTPATRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLVLSAEDPRTDISLYINSPGGS

VTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTHGKRYALPNARIMMHQPSAGIGGTTADIEIQAQNLEFTKQAI

ERITAEHTGQSEETISRDGDRDRWFTAEQAKEYGMVDRVVESLDDVRPAASRRRMGL

Nucleotide

Download Length: 654 bp

                                >NTDB_id=327175 FNV62_RS07910 WP_054233834.1 1647553..1648206(+) (clpP) [Streptomyces sp. RLB3-17]

ATGACTCCACTCATCACCGGCCGGTACCCGGCCCACGCACCGCGCGCCGAGGACGGCGACACCCCCGCGACCCGCTTCGA

CGACCACCTGGCCGCCCAGCTGCTCGCGCAGCGCATCGTCCTGCTCGGCACCCAGGTCGACGAGGTGTCCGCGAACCGGG

TCTGCGCCCAGCTGCTCGTACTGTCGGCGGAGGACCCGCGCACCGACATCAGTCTGTACATCAACAGCCCGGGCGGATCG

GTGACCGCGGGGCTCGCGATCTACGACACCATGCGGCTGATCCCCAACGACGTCTCGACCCTCGCCATGGGATTCGCCGC

GAGCATGGGGCAGTTCCTGCTCAGCGTCGGCACCCACGGCAAGCGGTACGCGCTGCCCAACGCGCGGATCATGATGCACC

AGCCGTCGGCGGGCATCGGCGGCACCACCGCCGACATCGAGATCCAGGCGCAGAACCTGGAGTTCACGAAGCAGGCCATC

GAGCGGATCACCGCGGAGCACACCGGCCAGAGCGAGGAAACGATCTCCCGGGACGGCGACCGCGACCGCTGGTTCACGGC

CGAACAGGCCAAGGAGTACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGACGACGTCCGCCCGGCCGCGTCACGGCGAC

GGATGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-201)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A250VJP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	50	82.028	0.41
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.711	79.724	0.396
clpP	Streptococcus pneumoniae D39	47.399	79.724	0.378
clpP	Streptococcus pneumoniae R6	47.399	79.724	0.378
clpP	Streptococcus pneumoniae TIGR4	47.399	79.724	0.378
clpP	Streptococcus pneumoniae Rx1	47.399	79.724	0.378
clpP	Lactococcus lactis subsp. cremoris KW2	46.286	80.645	0.373
clpP	Streptococcus pyogenes JRS4	46.286	80.645	0.373
clpP	Streptococcus pyogenes MGAS315	46.286	80.645	0.373
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.714	80.645	0.369
clpP	Streptococcus thermophilus LMG 18311	45.665	79.724	0.364
clpP	Streptococcus thermophilus LMD-9	45.665	79.724	0.364

Detailed information NTG0327175