Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FNV66_RS09240 Genome accession   NZ_CP041607
Coordinates   1673949..1674551 (+) Length   200 a.a.
NCBI ID   WP_054233833.1    Uniprot ID   A0A1I2AVF0
Organism   Streptomyces sp. S1D4-14     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668949..1679551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV66_RS54845 - 1669852..1670862 (-) 1011 Protein_1620 IS110 family transposase -
  FNV66_RS09225 (FNV66_09375) - 1671227..1671709 (-) 483 WP_143600466.1 VOC family protein -
  FNV66_RS09230 (FNV66_09380) - 1671868..1673091 (+) 1224 WP_143600467.1 epoxide hydrolase family protein -
  FNV66_RS09235 (FNV66_09385) clpP 1673294..1673947 (+) 654 WP_054233834.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV66_RS09240 (FNV66_09390) clpP 1673949..1674551 (+) 603 WP_054233833.1 ClpP family protease Regulator
  FNV66_RS56145 (FNV66_09395) - 1674621..1675094 (-) 474 WP_097283232.1 RodZ family helix-turn-helix domain-containing protein -
  FNV66_RS09250 (FNV66_09400) - 1675182..1675703 (-) 522 WP_079089687.1 DinB family protein -
  FNV66_RS09255 (FNV66_09405) - 1675978..1676205 (+) 228 WP_054233831.1 DUF5133 domain-containing protein -
  FNV66_RS09260 (FNV66_09410) - 1676315..1677658 (-) 1344 WP_164404845.1 diacylglycerol kinase family protein -
  FNV66_RS09265 (FNV66_09415) - 1677872..1678315 (-) 444 WP_143600469.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21700.64 Da        Isoelectric Point: 5.0288

>NTDB_id=327078 FNV66_RS09240 WP_054233833.1 1673949..1674551(+) (clpP) [Streptomyces sp. S1D4-14]
MGTYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSNPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGRQGTVSDLALQAKEMLRIRAQVEEVLSRH
THHDVPTLRADMDRDKVFTAQEAVAYGLADEVLSRRLATV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=327078 FNV66_RS09240 WP_054233833.1 1673949..1674551(+) (clpP) [Streptomyces sp. S1D4-14]
ATGGGTACGTACACGATTCCGAACGTCGTCGAGCGGACCCCGCAGGGCGAGCGGTCCTACGACGTCTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTTCTCGGCACCGAGATCGACGACGGGGTCGCCAACGTCGTCATCGCGCAACTCCTCCATCTGG
AGTCGTCGAACCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGTGGGTCGTTCACTTCGCTCATGGCGATCTAC
GACACGATGACGTTCGTCCAGGCGCCGATCTCGACGTTCTGCGTCGGCCAGGCGGCCTCCACGGCGGCGGTGCTGCTGGC
CGGCGGCGATCCCGGACGGCGGTTCGTGCTGGAGCACGCGCGTGTGCTGCTCGGCCAGCCCGCGAGCGGCGGCCGGCAGG
GGACGGTGTCCGACCTCGCCCTCCAGGCCAAGGAGATGCTCCGTATCCGCGCCCAGGTCGAGGAGGTCCTCTCCCGGCAC
ACGCACCACGACGTGCCGACCCTGCGCGCGGACATGGACCGCGACAAGGTGTTCACCGCGCAGGAGGCCGTGGCGTACGG
ACTCGCGGACGAGGTCCTGAGCCGACGGCTCGCGACGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2AVF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.148

94.5

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.316

95

0.44
  clpP Streptococcus mutans UA159

40.212

94.5

0.38
  clpP Streptococcus pneumoniae R6

39.583

96

0.38
  clpP Streptococcus pneumoniae TIGR4

39.583

96

0.38
  clpP Streptococcus pneumoniae Rx1

39.583

96

0.38
  clpP Streptococcus pneumoniae D39

39.583

96

0.38
  clpP Streptococcus pyogenes JRS4

39.683

94.5

0.375
  clpP Streptococcus pyogenes MGAS315

39.683

94.5

0.375
  clpP Lactococcus lactis subsp. cremoris KW2

38.743

95.5

0.37
  clpP Streptococcus thermophilus LMG 18311

38.021

96

0.365
  clpP Streptococcus thermophilus LMD-9

38.021

96

0.365