Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EGX68_RS06605 Genome accession   NZ_CP033735
Coordinates   1287435..1287752 (-) Length   105 a.a.
NCBI ID   WP_040030035.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain FDAARGOS_538     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282435..1292752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX68_RS06575 (EGX68_06580) gcvPA 1283003..1284355 (-) 1353 WP_103211233.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EGX68_RS06580 (EGX68_06585) gcvT 1284373..1285464 (-) 1092 WP_019469340.1 glycine cleavage system aminomethyltransferase GcvT -
  EGX68_RS06585 (EGX68_06590) - 1285621..1286103 (-) 483 WP_046467742.1 shikimate kinase -
  EGX68_RS06595 (EGX68_06600) - 1286310..1286753 (-) 444 WP_019469343.1 ComGF family competence protein -
  EGX68_RS06600 (EGX68_06610) comGD 1287005..1287445 (-) 441 WP_019469345.1 competence type IV pilus minor pilin ComGD -
  EGX68_RS06605 (EGX68_06615) comGC 1287435..1287752 (-) 318 WP_040030035.1 competence type IV pilus major pilin ComGC Machinery gene
  EGX68_RS13750 comGB 1287772..1288134 (-) 363 WP_230620688.1 type II secretion system F family protein Machinery gene
  EGX68_RS06615 (EGX68_06625) comGA 1288810..1289784 (-) 975 WP_019469347.1 competence type IV pilus ATPase ComGA Machinery gene
  EGX68_RS06620 (EGX68_06630) - 1289844..1290467 (-) 624 WP_019469348.1 MBL fold metallo-hydrolase -
  EGX68_RS06625 (EGX68_06635) - 1290470..1290793 (-) 324 WP_019469349.1 MTH1187 family thiamine-binding protein -
  EGX68_RS06630 (EGX68_06640) - 1290793..1291779 (-) 987 WP_019469350.1 glucokinase -
  EGX68_RS06635 (EGX68_06645) - 1292088..1292288 (-) 201 WP_103211250.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11796.91 Da        Isoelectric Point: 9.1680

>NTDB_id=325184 EGX68_RS06605 WP_040030035.1 1287435..1287752(-) (comGC) [Staphylococcus cohnii strain FDAARGOS_538]
MNKIKQSFNKRAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQSTGCEAQIKMIESQVEEFTLKHNKKPQSIDELIADG
YIKENQKKCKSGSTITINNGEVIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=325184 EGX68_RS06605 WP_040030035.1 1287435..1287752(-) (comGC) [Staphylococcus cohnii strain FDAARGOS_538]
ATGAACAAAATAAAACAGTCTTTTAATAAGCGTGCATTTACTTTAATTGAAATGCTCCTTGTATTATTAATTATAAGCTT
ATTATTGATTTTGATTATACCCAATATTGCAAAACAATCTTCACATATTCAAAGTACTGGTTGCGAAGCACAAATAAAAA
TGATTGAAAGTCAAGTTGAAGAATTTACTCTAAAACATAATAAAAAACCACAGTCTATAGATGAACTGATTGCGGATGGC
TATATCAAAGAAAATCAAAAAAAATGTAAATCAGGATCAACCATTACTATAAATAACGGTGAAGTAATTGCAAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

75.789

90.476

0.686
  comGC Staphylococcus aureus N315

75.789

90.476

0.686
  comYC Streptococcus mutans UA159

46.512

81.905

0.381
  comYC Streptococcus mutans UA140

46.512

81.905

0.381
  comGC/cglC Streptococcus mitis NCTC 12261

42.105

90.476

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

42.105

90.476

0.381
  comYC Streptococcus gordonii str. Challis substr. CH1

44.186

81.905

0.362
  comGC/cglC Streptococcus mitis SK321

48.101

75.238

0.362

Multiple sequence alignment