Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | EGX68_RS13750 | Genome accession | NZ_CP033735 |
| Coordinates | 1287772..1288134 (-) | Length | 120 a.a. |
| NCBI ID | WP_230620688.1 | Uniprot ID | - |
| Organism | Staphylococcus cohnii strain FDAARGOS_538 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1282772..1293134
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX68_RS06575 (EGX68_06580) | gcvPA | 1283003..1284355 (-) | 1353 | WP_103211233.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| EGX68_RS06580 (EGX68_06585) | gcvT | 1284373..1285464 (-) | 1092 | WP_019469340.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EGX68_RS06585 (EGX68_06590) | - | 1285621..1286103 (-) | 483 | WP_046467742.1 | shikimate kinase | - |
| EGX68_RS06595 (EGX68_06600) | - | 1286310..1286753 (-) | 444 | WP_019469343.1 | ComGF family competence protein | - |
| EGX68_RS06600 (EGX68_06610) | comGD | 1287005..1287445 (-) | 441 | WP_019469345.1 | competence type IV pilus minor pilin ComGD | - |
| EGX68_RS06605 (EGX68_06615) | comGC | 1287435..1287752 (-) | 318 | WP_040030035.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EGX68_RS13750 | comGB | 1287772..1288134 (-) | 363 | WP_230620688.1 | type II secretion system F family protein | Machinery gene |
| EGX68_RS06615 (EGX68_06625) | comGA | 1288810..1289784 (-) | 975 | WP_019469347.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EGX68_RS06620 (EGX68_06630) | - | 1289844..1290467 (-) | 624 | WP_019469348.1 | MBL fold metallo-hydrolase | - |
| EGX68_RS06625 (EGX68_06635) | - | 1290470..1290793 (-) | 324 | WP_019469349.1 | MTH1187 family thiamine-binding protein | - |
| EGX68_RS06630 (EGX68_06640) | - | 1290793..1291779 (-) | 987 | WP_019469350.1 | glucokinase | - |
| EGX68_RS06635 (EGX68_06645) | - | 1292088..1292288 (-) | 201 | WP_103211250.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13966.85 Da Isoelectric Point: 7.9677
>NTDB_id=325205 EGX68_RS13750 WP_230620688.1 1287772..1288134(-) (comGB) [Staphylococcus cohnii strain FDAARGOS_538]
MTLQSIVDIYSKQKNDTYLIYLARKLATGTQSGHKLSEILKKISCFEEGLINFIEEGEKTGKLDIELKLYSEIIFTKIER
YLQLIIKFIQPIIFIMLGILIISLYLVIMLPMFDLMQTIK
MTLQSIVDIYSKQKNDTYLIYLARKLATGTQSGHKLSEILKKISCFEEGLINFIEEGEKTGKLDIELKLYSEIIFTKIER
YLQLIIKFIQPIIFIMLGILIISLYLVIMLPMFDLMQTIK
Nucleotide
Download Length: 363 bp
>NTDB_id=325205 EGX68_RS13750 WP_230620688.1 1287772..1288134(-) (comGB) [Staphylococcus cohnii strain FDAARGOS_538]
GTGACCTTACAATCAATCGTTGATATATATTCTAAGCAAAAAAACGACACATATTTAATTTACCTTGCTCGAAAATTAGC
AACAGGTACACAAAGCGGTCATAAGTTAAGTGAGATTTTAAAAAAGATTTCTTGTTTTGAAGAAGGGTTGATTAATTTTA
TTGAGGAGGGTGAAAAGACAGGGAAACTAGACATAGAATTAAAATTATATAGCGAAATCATATTTACAAAAATTGAACGG
TATTTACAATTAATAATTAAATTTATACAACCAATTATATTTATCATGCTAGGGATACTGATCATTTCCTTATATTTAGT
CATAATGTTACCTATGTTCGATCTAATGCAAACGATTAAATAA
GTGACCTTACAATCAATCGTTGATATATATTCTAAGCAAAAAAACGACACATATTTAATTTACCTTGCTCGAAAATTAGC
AACAGGTACACAAAGCGGTCATAAGTTAAGTGAGATTTTAAAAAAGATTTCTTGTTTTGAAGAAGGGTTGATTAATTTTA
TTGAGGAGGGTGAAAAGACAGGGAAACTAGACATAGAATTAAAATTATATAGCGAAATCATATTTACAAAAATTGAACGG
TATTTACAATTAATAATTAAATTTATACAACCAATTATATTTATCATGCTAGGGATACTGATCATTTCCTTATATTTAGT
CATAATGTTACCTATGTTCGATCTAATGCAAACGATTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
48.333 |
100 |
0.483 |
| comGB | Staphylococcus aureus N315 |
48.333 |
100 |
0.483 |