Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EFV54_RS11280 Genome accession   NZ_CP033607
Coordinates   2186418..2186816 (-) Length   132 a.a.
NCBI ID   WP_021214886.1    Uniprot ID   -
Organism   Lactococcus lactis strain IL1403     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2181418..2191816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFV54_RS11240 (EFV54_11240) - 2181440..2182306 (+) 867 WP_010906309.1 RluA family pseudouridine synthase -
  EFV54_RS11245 (EFV54_11245) - 2182345..2183154 (-) 810 WP_010906310.1 metal ABC transporter permease -
  EFV54_RS11250 (EFV54_11250) - 2183147..2183884 (-) 738 WP_010906311.1 metal ABC transporter ATP-binding protein -
  EFV54_RS11255 (EFV54_11255) - 2184061..2184903 (-) 843 WP_010906312.1 metal ABC transporter substrate-binding protein -
  EFV54_RS11260 (EFV54_11260) - 2184900..2185337 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  EFV54_RS11265 (EFV54_11265) comGG 2185418..2185702 (-) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  EFV54_RS11270 (EFV54_11270) comGF 2185741..2186187 (-) 447 WP_164752712.1 competence type IV pilus minor pilin ComGF Machinery gene
  EFV54_RS11275 (EFV54_11275) comGE 2186150..2186446 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  EFV54_RS11280 (EFV54_11280) comGD 2186418..2186816 (-) 399 WP_021214886.1 competence type IV pilus minor pilin ComGD Machinery gene
  EFV54_RS11285 (EFV54_11285) comGC 2186809..2187192 (-) 384 WP_010906318.1 competence type IV pilus major pilin ComGC Machinery gene
  EFV54_RS11290 (EFV54_11290) comGB 2187206..2188225 (-) 1020 WP_043994702.1 competence type IV pilus assembly protein ComGB Machinery gene
  EFV54_RS11295 (EFV54_11295) comGA 2188173..2189111 (-) 939 WP_010906320.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15173.79 Da        Isoelectric Point: 7.9839

>NTDB_id=324390 EFV54_RS11280 WP_021214886.1 2186418..2186816(-) (comGD) [Lactococcus lactis strain IL1403]
MTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICEDRSITI
PKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 399 bp        

>NTDB_id=324390 EFV54_RS11280 WP_021214886.1 2186418..2186816(-) (comGD) [Lactococcus lactis strain IL1403]
ATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCACAACTCTTTTTTCTTTAGA
AATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAG
ATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATT
CCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAAT
TTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

67.424

100

0.674
  comYD Streptococcus mutans UA140

40.625

96.97

0.394
  comYD Streptococcus mutans UA159

40.625

96.97

0.394
  comYD Streptococcus gordonii str. Challis substr. CH1

40.625

96.97

0.394

Multiple sequence alignment