Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FIU24_RS19485 Genome accession   NZ_CP041013
Coordinates   4094465..4095109 (-) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain FDAARGOS_610     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4089465..4100109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU24_RS19455 (FIU24_19455) - 4089719..4089973 (-) 255 WP_023081358.1 Txe/YoeB family addiction module toxin -
  FIU24_RS19460 (FIU24_19460) yefM 4089970..4090221 (-) 252 WP_004350479.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  FIU24_RS19465 (FIU24_19465) - 4090444..4091676 (-) 1233 Protein_3748 tyrosine-type recombinase/integrase -
  FIU24_RS19475 (FIU24_19475) pgsA 4092044..4092604 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FIU24_RS19480 (FIU24_19480) uvrC 4092638..4094464 (-) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  FIU24_RS19485 (FIU24_19485) letA 4094465..4095109 (-) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FIU24_RS19495 (FIU24_19495) pqsH 4095451..4096599 (-) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  FIU24_RS19500 (FIU24_19500) - 4097217..4098245 (+) 1029 WP_003097554.1 AraC family transcriptional regulator -
  FIU24_RS19505 (FIU24_19505) - 4098261..4099475 (-) 1215 WP_004350046.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=324388 FIU24_RS19485 WP_003090351.1 4094465..4095109(-) (letA) [Pseudomonas aeruginosa strain FDAARGOS_610]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=324388 FIU24_RS19485 WP_003090351.1 4094465..4095109(-) (letA) [Pseudomonas aeruginosa strain FDAARGOS_610]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537

Multiple sequence alignment