Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | EFV54_RS11275 | Genome accession | NZ_CP033607 |
| Coordinates | 2186150..2186446 (-) | Length | 98 a.a. |
| NCBI ID | WP_010906316.1 | Uniprot ID | A0A3N6L9Y1 |
| Organism | Lactococcus lactis strain IL1403 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2181150..2191446
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFV54_RS11240 (EFV54_11240) | - | 2181440..2182306 (+) | 867 | WP_010906309.1 | RluA family pseudouridine synthase | - |
| EFV54_RS11245 (EFV54_11245) | - | 2182345..2183154 (-) | 810 | WP_010906310.1 | metal ABC transporter permease | - |
| EFV54_RS11250 (EFV54_11250) | - | 2183147..2183884 (-) | 738 | WP_010906311.1 | metal ABC transporter ATP-binding protein | - |
| EFV54_RS11255 (EFV54_11255) | - | 2184061..2184903 (-) | 843 | WP_010906312.1 | metal ABC transporter substrate-binding protein | - |
| EFV54_RS11260 (EFV54_11260) | - | 2184900..2185337 (-) | 438 | WP_010906313.1 | zinc-dependent MarR family transcriptional regulator | - |
| EFV54_RS11265 (EFV54_11265) | comGG | 2185418..2185702 (-) | 285 | WP_010906314.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| EFV54_RS11270 (EFV54_11270) | comGF | 2185741..2186187 (-) | 447 | WP_164752712.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| EFV54_RS11275 (EFV54_11275) | comGE | 2186150..2186446 (-) | 297 | WP_010906316.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| EFV54_RS11280 (EFV54_11280) | comGD | 2186418..2186816 (-) | 399 | WP_021214886.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EFV54_RS11285 (EFV54_11285) | comGC | 2186809..2187192 (-) | 384 | WP_010906318.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EFV54_RS11290 (EFV54_11290) | comGB | 2187206..2188225 (-) | 1020 | WP_043994702.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EFV54_RS11295 (EFV54_11295) | comGA | 2188173..2189111 (-) | 939 | WP_010906320.1 | competence type IV pilus ATPase ComGA | Machinery gene |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 11076.95 Da Isoelectric Point: 6.4684
>NTDB_id=324389 EFV54_RS11275 WP_010906316.1 2186150..2186446(-) (comGE) [Lactococcus lactis strain IL1403]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
Nucleotide
Download Length: 297 bp
>NTDB_id=324389 EFV54_RS11275 WP_010906316.1 2186150..2186446(-) (comGE) [Lactococcus lactis strain IL1403]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Lactococcus lactis subsp. cremoris KW2 |
68.041 |
98.98 |
0.673 |