Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EAV92_RS19465 Genome accession   NZ_CP033433
Coordinates   4227787..4228290 (-) Length   167 a.a.
NCBI ID   WP_123042636.1    Uniprot ID   A0A3G3K223
Organism   Cohnella candidum strain 18JY8-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4222787..4233290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAV92_RS19435 (EAV92_19435) crcB 4223908..4224306 (+) 399 WP_123042630.1 fluoride efflux transporter CrcB -
  EAV92_RS19440 (EAV92_19440) crcB 4224303..4224662 (+) 360 WP_123042631.1 fluoride efflux transporter CrcB -
  EAV92_RS19445 (EAV92_19445) - 4224668..4226005 (-) 1338 WP_123042632.1 sensor histidine kinase -
  EAV92_RS19450 (EAV92_19450) - 4225995..4226669 (-) 675 WP_123042633.1 response regulator transcription factor -
  EAV92_RS19455 (EAV92_19455) - 4226773..4227282 (-) 510 WP_123042634.1 hypothetical protein -
  EAV92_RS19460 (EAV92_19460) rpsR 4227449..4227766 (-) 318 WP_123042635.1 30S ribosomal protein S18 -
  EAV92_RS19465 (EAV92_19465) ssbA 4227787..4228290 (-) 504 WP_123042636.1 single-stranded DNA-binding protein Machinery gene
  EAV92_RS19470 (EAV92_19470) rpsF 4228358..4228648 (-) 291 WP_123042637.1 30S ribosomal protein S6 -
  EAV92_RS19475 (EAV92_19475) - 4228855..4229037 (+) 183 WP_123042638.1 YjzC family protein -
  EAV92_RS19485 (EAV92_19485) - 4229763..4229993 (-) 231 WP_123042639.1 DUF951 domain-containing protein -
  EAV92_RS19490 (EAV92_19490) - 4229996..4230892 (-) 897 WP_123042640.1 mechanosensitive ion channel family protein -
  EAV92_RS19495 (EAV92_19495) - 4230922..4231170 (-) 249 WP_123042641.1 DUF3343 domain-containing protein -
  EAV92_RS19500 (EAV92_19500) yyaC 4231291..4231908 (+) 618 WP_123042642.1 spore protease YyaC -
  EAV92_RS19505 (EAV92_19505) - 4231883..4232374 (-) 492 WP_123042643.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18272.00 Da        Isoelectric Point: 4.8857

>NTDB_id=323719 EAV92_RS19465 WP_123042636.1 4227787..4228290(-) (ssbA) [Cohnella candidum strain 18JY8-7]
MLNRVILIGRLTKDPELRYTPAGVAVAQFTLAVDRPFSSSREEGNREREADFIPIVTWRQLAETCANYLRKGRLAAVEGR
IQVRNYENNEGRRVYVTEVIADNVRFLESPNRESGGGGAGRDEYSGGGGSGYGGGSRNSGSRNSGNNNDPFADDGRPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=323719 EAV92_RS19465 WP_123042636.1 4227787..4228290(-) (ssbA) [Cohnella candidum strain 18JY8-7]
ATGTTGAACCGGGTTATATTGATCGGACGACTGACCAAAGATCCCGAGCTTCGTTACACGCCTGCCGGCGTGGCCGTCGC
CCAATTCACGCTCGCGGTGGACCGTCCGTTCTCGTCTTCGAGAGAAGAAGGCAACAGAGAACGGGAAGCGGATTTCATTC
CGATCGTGACATGGCGCCAGCTGGCCGAGACTTGCGCGAATTACCTTCGCAAAGGTCGCCTGGCCGCCGTAGAAGGCCGC
ATTCAAGTGCGCAACTACGAGAATAACGAAGGCCGTCGCGTTTACGTGACGGAAGTGATCGCCGATAACGTACGTTTCCT
GGAATCGCCGAACCGCGAGAGCGGCGGAGGCGGCGCGGGACGGGACGAGTATTCCGGCGGTGGCGGAAGCGGGTACGGAG
GCGGAAGCCGCAATTCCGGCTCGAGAAACAGCGGAAACAACAACGATCCCTTTGCGGACGACGGACGACCGATCGACATA
TCGGACGATGATTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G3K223

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.386

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

48.571

100

0.509
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.31

69.461

0.377
  ssb Neisseria meningitidis MC58

34.659

100

0.365
  ssb Neisseria gonorrhoeae MS11

34.659

100

0.365

Multiple sequence alignment