Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | EAE30_RS13295 | Genome accession | NZ_CP033078 |
| Coordinates | 1740109..1740399 (-) | Length | 96 a.a. |
| NCBI ID | WP_199287106.1 | Uniprot ID | - |
| Organism | Vibrio zhugei strain HBUAS61001 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1736931..1748915 | 1740109..1740399 | within | 0 |
Gene organization within MGE regions
Location: 1736931..1748915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAE30_RS13280 | ihfB | 1736931..1737215 (-) | 285 | WP_123016353.1 | integration host factor subunit beta | - |
| EAE30_RS13285 | rpsA | 1737454..1739127 (-) | 1674 | WP_123016354.1 | 30S ribosomal protein S1 | - |
| EAE30_RS13290 | cmk | 1739243..1739920 (-) | 678 | WP_123016355.1 | (d)CMP kinase | - |
| EAE30_RS13295 | comEA | 1740109..1740399 (-) | 291 | WP_199287106.1 | ComEA family DNA-binding protein | Machinery gene |
| EAE30_RS13300 | ppiD | 1740543..1742396 (-) | 1854 | WP_123016357.1 | peptidylprolyl isomerase | - |
| EAE30_RS13305 | - | 1742541..1742846 (-) | 306 | WP_261809164.1 | HU family DNA-binding protein | - |
| EAE30_RS13310 | lon | 1743006..1745360 (-) | 2355 | WP_123016359.1 | endopeptidase La | - |
| EAE30_RS13315 | clpX | 1745478..1746758 (-) | 1281 | WP_123016360.1 | ATP-dependent protease ATP-binding subunit ClpX | - |
| EAE30_RS13320 | clpP | 1746876..1747502 (-) | 627 | WP_123016361.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| EAE30_RS13325 | tig | 1747608..1748915 (-) | 1308 | WP_123016362.1 | trigger factor | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10403.08 Da Isoelectric Point: 10.1477
>NTDB_id=321218 EAE30_RS13295 WP_199287106.1 1740109..1740399(-) (comEA) [Vibrio zhugei strain HBUAS61001]
MRTLFITLLFAFTLSGTAAMADSSTQVDEIQITVNVNQASAEELATLLNGIGQSKANAIVMYRDKNGPFKSKEELMKVKG
IGNALVAKNDARLRLK
MRTLFITLLFAFTLSGTAAMADSSTQVDEIQITVNVNQASAEELATLLNGIGQSKANAIVMYRDKNGPFKSKEELMKVKG
IGNALVAKNDARLRLK
Nucleotide
Download Length: 291 bp
>NTDB_id=321218 EAE30_RS13295 WP_199287106.1 1740109..1740399(-) (comEA) [Vibrio zhugei strain HBUAS61001]
ATCCGCACACTTTTTATCACTCTTCTGTTTGCTTTTACGCTTTCCGGTACCGCAGCGATGGCCGATTCCTCAACACAGGT
TGATGAGATTCAAATCACGGTCAACGTGAATCAGGCATCCGCAGAAGAACTGGCCACTTTACTCAATGGTATTGGCCAGT
CCAAAGCGAATGCTATCGTGATGTATCGTGATAAAAACGGGCCGTTTAAAAGCAAAGAAGAACTCATGAAGGTCAAAGGT
ATTGGTAATGCACTCGTTGCGAAAAATGACGCACGTTTGCGTCTTAAGTAA
ATCCGCACACTTTTTATCACTCTTCTGTTTGCTTTTACGCTTTCCGGTACCGCAGCGATGGCCGATTCCTCAACACAGGT
TGATGAGATTCAAATCACGGTCAACGTGAATCAGGCATCCGCAGAAGAACTGGCCACTTTACTCAATGGTATTGGCCAGT
CCAAAGCGAATGCTATCGTGATGTATCGTGATAAAAACGGGCCGTTTAAAAGCAAAGAAGAACTCATGAAGGTCAAAGGT
ATTGGTAATGCACTCGTTGCGAAAAATGACGCACGTTTGCGTCTTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
49.505 |
100 |
0.521 |
| comEA | Vibrio cholerae strain A1552 |
49.505 |
100 |
0.521 |
| comEA | Vibrio campbellii strain DS40M4 |
49.474 |
98.958 |
0.49 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
35.455 |
100 |
0.406 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
57.576 |
68.75 |
0.396 |
| comEA | Acinetobacter baumannii strain A118 |
43.902 |
85.417 |
0.375 |