Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MSIL_RS11400 Genome accession   NC_011666
Coordinates   2417964..2418470 (-) Length   168 a.a.
NCBI ID   WP_012591236.1    Uniprot ID   B8ET29
Organism   Methylocella silvestris BL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2412964..2423470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSIL_RS11385 (Msil_2230) hspQ 2413695..2414024 (+) 330 WP_012591233.1 heat shock protein HspQ -
  MSIL_RS11390 (Msil_2231) - 2414040..2414744 (-) 705 WP_012591234.1 potassium channel family protein -
  MSIL_RS11395 (Msil_2232) gyrA 2415007..2417790 (-) 2784 WP_012591235.1 DNA gyrase subunit A -
  MSIL_RS11400 (Msil_2233) ssb 2417964..2418470 (-) 507 WP_012591236.1 single-stranded DNA-binding protein Machinery gene
  MSIL_RS11405 (Msil_2234) - 2418723..2420051 (-) 1329 WP_012591237.1 dicarboxylate/amino acid:cation symporter -
  MSIL_RS11410 (Msil_2235) uvrA 2420263..2423313 (+) 3051 WP_012591238.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18701.71 Da        Isoelectric Point: 6.0082

>NTDB_id=32050 MSIL_RS11400 WP_012591236.1 2417964..2418470(-) (ssb) [Methylocella silvestris BL2]
MAGSVNKVILIGNLGRDPETRRMNSGDAVVSFSLATTDSWRDKATGERKDRTEWHNIVIFNENLGKIADQYCKKGSKVYV
EGQLQTREYTDKDGNQRKVTEIVLQRFRGELTLLDSRGGRSEAEGDRGFEDSSSSFGRSSPMERAPERRPAAAGASRVAD
IIDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=32050 MSIL_RS11400 WP_012591236.1 2417964..2418470(-) (ssb) [Methylocella silvestris BL2]
ATGGCGGGCAGCGTCAACAAGGTCATTCTCATCGGCAATCTCGGCCGCGATCCCGAAACGCGGCGGATGAATTCCGGCGA
CGCCGTCGTGAGCTTCAGCCTCGCCACCACGGATTCCTGGCGCGATAAGGCGACGGGCGAGCGGAAAGACCGCACCGAAT
GGCATAACATCGTGATTTTCAATGAAAATCTCGGCAAGATCGCGGATCAATATTGCAAGAAAGGCTCGAAGGTTTACGTC
GAGGGCCAGTTGCAGACGCGCGAATATACCGACAAGGACGGCAATCAGCGCAAGGTGACGGAAATTGTGCTGCAGCGTTT
TCGCGGCGAGCTGACGCTGCTCGACAGCCGCGGCGGCCGCAGCGAGGCCGAGGGCGATCGCGGCTTTGAGGATTCCTCGT
CGAGTTTCGGGCGCTCCTCGCCGATGGAGCGCGCCCCTGAACGCCGGCCGGCGGCAGCCGGGGCGAGCCGCGTCGCCGAC
ATCATTGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8ET29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

45.652

100

0.5
  ssb Neisseria meningitidis MC58

45.109

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.085

100

0.482
  ssb Vibrio cholerae strain A1552

42.197

100

0.435
  ssb Latilactobacillus sakei subsp. sakei 23K

34.463

100

0.363

Multiple sequence alignment