Detailed information NTG0320337

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4H18_RS07400
• Genome accession: NZ_CP032912
• Coordinates: 1497367..1498503 (-)
• Length: 378 a.a.
• NCBI ID: WP_139523282.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 13-A-EK8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1492367..1503503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H18_RS07380	-	1492377..1493660 (+)	1284	WP_139522669.1	RNA-guided endonuclease TnpB family protein	-
D4H18_RS07385	-	1493786..1494718 (-)	933	WP_139523277.1	GDP-L-fucose synthase	-
D4H18_RS07390	gmd	1494711..1495856 (-)	1146	WP_139523278.1	GDP-mannose 4,6-dehydratase	-
D4H18_RS07395	-	1495885..1497297 (-)	1413	WP_139523280.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H18_RS07400	comB10	1497367..1498503 (-)	1137	WP_139523282.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H18_RS07405	comB9	1498496..1499482 (-)	987	WP_139523284.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4H18_RS07410	comB8	1499482..1500219 (-)	738	WP_139523286.1	virB8 family protein	Machinery gene
D4H18_RS07415	comB7	1500216..1500329 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H18_RS07420	comB6	1500345..1501400 (-)	1056	WP_139523393.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H18_RS07425	-	1501408..1502403 (-)	996	WP_139523394.1	PDZ domain-containing protein	-
D4H18_RS07430	-	1502403..1502696 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4H18_RS07435	panD	1502699..1503052 (-)	354	WP_000142226.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42219.77 Da
• Isoelectric Point: 9.9924

>NTDB_id=320337 D4H18_RS07400 WP_139523282.1 1497367..1498503(-) (comB10) [Helicobacter pylori strain 13-A-EK8]
MNKWLKGAIVFVGGFATITTISLIYHQKPKAPLNNQSSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPMDLKANTTPPKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=320337 D4H18_RS07400 WP_139523282.1 1497367..1498503(-) (comB10) [Helicobacter pylori strain 13-A-EK8]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGTCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAACCCTCCCATGGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTATTTATTTCGCCCAATACTGACATCTTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.561	100	0.966