Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4H18_RS07410 Genome accession   NZ_CP032912
Coordinates   1499482..1500219 (-) Length   245 a.a.
NCBI ID   WP_139523286.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494482..1505219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS07390 gmd 1494711..1495856 (-) 1146 WP_139523278.1 GDP-mannose 4,6-dehydratase -
  D4H18_RS07395 - 1495885..1497297 (-) 1413 WP_139523280.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4H18_RS07400 comB10 1497367..1498503 (-) 1137 WP_139523282.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4H18_RS07405 comB9 1498496..1499482 (-) 987 WP_139523284.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4H18_RS07410 comB8 1499482..1500219 (-) 738 WP_139523286.1 virB8 family protein Machinery gene
  D4H18_RS07415 comB7 1500216..1500329 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4H18_RS07420 comB6 1500345..1501400 (-) 1056 WP_139523393.1 P-type conjugative transfer protein TrbL Machinery gene
  D4H18_RS07425 - 1501408..1502403 (-) 996 WP_139523394.1 PDZ domain-containing protein -
  D4H18_RS07430 - 1502403..1502696 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4H18_RS07435 panD 1502699..1503052 (-) 354 WP_000142226.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28526.74 Da        Isoelectric Point: 8.9546

>NTDB_id=320339 D4H18_RS07410 WP_139523286.1 1499482..1500219(-) (comB8) [Helicobacter pylori strain 13-A-EK8]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREIHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=320339 D4H18_RS07410 WP_139523286.1 1499482..1500219(-) (comB8) [Helicobacter pylori strain 13-A-EK8]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAAAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAATCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976

Multiple sequence alignment