Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4H18_RS07405 Genome accession   NZ_CP032912
Coordinates   1498496..1499482 (-) Length   328 a.a.
NCBI ID   WP_139523284.1    Uniprot ID   -
Organism   Helicobacter pylori strain 13-A-EK8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493496..1504482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H18_RS07385 - 1493786..1494718 (-) 933 WP_139523277.1 GDP-L-fucose synthase -
  D4H18_RS07390 gmd 1494711..1495856 (-) 1146 WP_139523278.1 GDP-mannose 4,6-dehydratase -
  D4H18_RS07395 - 1495885..1497297 (-) 1413 WP_139523280.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4H18_RS07400 comB10 1497367..1498503 (-) 1137 WP_139523282.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4H18_RS07405 comB9 1498496..1499482 (-) 987 WP_139523284.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4H18_RS07410 comB8 1499482..1500219 (-) 738 WP_139523286.1 virB8 family protein Machinery gene
  D4H18_RS07415 comB7 1500216..1500329 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4H18_RS07420 comB6 1500345..1501400 (-) 1056 WP_139523393.1 P-type conjugative transfer protein TrbL Machinery gene
  D4H18_RS07425 - 1501408..1502403 (-) 996 WP_139523394.1 PDZ domain-containing protein -
  D4H18_RS07430 - 1502403..1502696 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4H18_RS07435 panD 1502699..1503052 (-) 354 WP_000142226.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37744.50 Da        Isoelectric Point: 9.2339

>NTDB_id=320338 D4H18_RS07405 WP_139523284.1 1498496..1499482(-) (comB9) [Helicobacter pylori strain 13-A-EK8]
MRKVLCALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENALENAPTNDNKPLKEEPLKEEKEETKEKEEETITIGDNTNVMKIVKKDIQKGYKALKSSQRKWYCL
GICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKKGKDE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=320338 D4H18_RS07405 WP_139523284.1 1498496..1499482(-) (comB9) [Helicobacter pylori strain 13-A-EK8]
ATGCGTAAGGTTTTATGTGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATATTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCCAACAAACGACAACAAGCCCTT
AAAAGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTA
ATGTGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
GGGATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGA
TTGTGGGCGATTACATCATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGT
TTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

95.122

100

0.951

Multiple sequence alignment