Detailed information NTG0320341

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4H18_RS07420
• Genome accession: NZ_CP032912
• Coordinates: 1500345..1501400 (-)
• Length: 351 a.a.
• NCBI ID: WP_139523393.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 13-A-EK8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1495345..1506400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4H18_RS07395	-	1495885..1497297 (-)	1413	WP_139523280.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4H18_RS07400	comB10	1497367..1498503 (-)	1137	WP_139523282.1	DNA type IV secretion system protein ComB10	Machinery gene
D4H18_RS07405	comB9	1498496..1499482 (-)	987	WP_139523284.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4H18_RS07410	comB8	1499482..1500219 (-)	738	WP_139523286.1	virB8 family protein	Machinery gene
D4H18_RS07415	comB7	1500216..1500329 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4H18_RS07420	comB6	1500345..1501400 (-)	1056	WP_139523393.1	P-type conjugative transfer protein TrbL	Machinery gene
D4H18_RS07425	-	1501408..1502403 (-)	996	WP_139523394.1	PDZ domain-containing protein	-
D4H18_RS07430	-	1502403..1502696 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4H18_RS07435	panD	1502699..1503052 (-)	354	WP_000142226.1	aspartate 1-decarboxylase	-
D4H18_RS07440	-	1503042..1505267 (-)	2226	WP_139523288.1	ATP-dependent Clp protease ATP-binding subunit	-
D4H18_RS07445	-	1505267..1505542 (-)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
D4H18_RS07450	-	1505573..1505986 (-)	414	WP_033587787.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39781.67 Da
• Isoelectric Point: 8.8165

>NTDB_id=320341 D4H18_RS07420 WP_139523393.1 1500345..1501400(-) (comB6) [Helicobacter pylori strain 13-A-EK8]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSHFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAFNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320341 D4H18_RS07420 WP_139523393.1 1500345..1501400(-) (comB6) [Helicobacter pylori strain 13-A-EK8]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCTATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCACTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGCTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954